Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
BRCA1P38398 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCA1P38398 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCA1P38398 RN7SL578P-201ENST00000477781 283 ntBASIC17.44■□□□□ 0.38
BRCA1P38398 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCA1P38398 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC17.44■□□□□ 0.38
BRCA1P38398 MIR4254-201ENST00000581063 76 ntBASIC17.44■□□□□ 0.38
BRCA1P38398 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC17.44■□□□□ 0.38
BRCA1P38398 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC17.44■□□□□ 0.38
BRCA1P38398 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.44■□□□□ 0.38
BRCA1P38398 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.44■□□□□ 0.38
BRCA1P38398 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.44■□□□□ 0.38
BRCA1P38398 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 AL161932.2-201ENST00000435436 679 ntBASIC17.44■□□□□ 0.38
BRCA1P38398 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.44■□□□□ 0.38
BRCA1P38398 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
BRCA1P38398 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC17.44■□□□□ 0.38
BRCA1P38398 MIR6893-201ENST00000613458 69 ntBASIC17.44■□□□□ 0.38
BRCA1P38398 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC17.44■□□□□ 0.38
BRCA1P38398 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCA1P38398 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
BRCA1P38398 LINC02199-201ENST00000506655 2702 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 AP003680.1-201ENST00000598970 3660 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
BRCA1P38398 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.43■□□□□ 0.38
BRCA1P38398 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCA1P38398 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC17.43■□□□□ 0.38
BRCA1P38398 RN7SL375P-201ENST00000492442 298 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC17.43■□□□□ 0.38
BRCA1P38398 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 URB1-AS1-201ENST00000534991 831 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC17.43■□□□□ 0.38
BRCA1P38398 CSTP2-201ENST00000610599 398 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 AC006986.1-201ENST00000612764 241 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 GOLGA8UP-201ENST00000527159 1755 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.43■□□□□ 0.38
BRCA1P38398 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 AC015688.4-201ENST00000580780 1647 ntBASIC17.43■□□□□ 0.38
BRCA1P38398 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
BRCA1P38398 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.42■□□□□ 0.38
BRCA1P38398 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.42■□□□□ 0.38
BRCA1P38398 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
BRCA1P38398 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC17.42■□□□□ 0.38
BRCA1P38398 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC17.42■□□□□ 0.38
BRCA1P38398 VDAC1P11-201ENST00000458323 852 ntBASIC17.42■□□□□ 0.38
BRCA1P38398 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC17.42■□□□□ 0.38
BRCA1P38398 SLC25A15P3-201ENST00000505530 290 ntBASIC17.42■□□□□ 0.38
BRCA1P38398 AC093300.1-201ENST00000510368 1201 ntBASIC17.42■□□□□ 0.38
BRCA1P38398 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC17.42■□□□□ 0.38
BRCA1P38398 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
BRCA1P38398 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.42■□□□□ 0.38
BRCA1P38398 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC17.42■□□□□ 0.38
BRCA1P38398 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.42■□□□□ 0.38
BRCA1P38398 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC17.42■□□□□ 0.38
BRCA1P38398 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BRCA1P38398 VENTXP4-201ENST00000449029 958 ntBASIC17.41■□□□□ 0.38
BRCA1P38398 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BRCA1P38398 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 BMF-206ENST00000558774 671 ntTSL 3 BASIC17.41■□□□□ 0.38
BRCA1P38398 AC084262.1-201ENST00000567818 751 ntBASIC17.41■□□□□ 0.38
BRCA1P38398 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms