Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXC9P31274 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HOXC9P31274 AC006486.2-201ENST00000624246 2199 ntBASIC19.42■□□□□ 0.7
HOXC9P31274 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 AL355334.1-201ENST00000417713 215 ntBASIC19.42■□□□□ 0.7
HOXC9P31274 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 RN7SL277P-201ENST00000481521 288 ntBASIC19.42■□□□□ 0.7
HOXC9P31274 ORAOV1P1-201ENST00000503108 395 ntBASIC19.42■□□□□ 0.7
HOXC9P31274 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXC9P31274 TMCO5B-205ENST00000530020 894 ntBASIC19.42■□□□□ 0.7
HOXC9P31274 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC19.42■□□□□ 0.7
HOXC9P31274 GMFG-209ENST00000600322 622 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXC9P31274 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC19.42■□□□□ 0.7
HOXC9P31274 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.42■□□□□ 0.7
HOXC9P31274 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 AC073347.1-201ENST00000421633 2643 ntBASIC19.42■□□□□ 0.7
HOXC9P31274 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXC9P31274 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC9P31274 AC105917.1-201ENST00000506637 2539 ntBASIC19.42■□□□□ 0.7
HOXC9P31274 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 HLA-DQB1-202ENST00000399079 1501 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 AC018442.1-201ENST00000421439 2061 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 KRT17P5-201ENST00000332088 839 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HOXC9P31274 AL627389.1-201ENST00000413508 1182 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 AC092580.1-201ENST00000433998 658 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 RN7SL81P-201ENST00000493781 261 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC9P31274 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 AC027237.1-201ENST00000560942 655 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 AC005618.3-201ENST00000624928 458 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 AP001184.1-201ENST00000637936 376 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC9P31274 MARK2P16-201ENST00000605714 1723 ntBASIC19.41■□□□□ 0.7
HOXC9P31274 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
HOXC9P31274 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXC9P31274 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC9P31274 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC9P31274 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
HOXC9P31274 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC9P31274 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HOXC9P31274 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC9P31274 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC9P31274 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HOXC9P31274 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 AC079112.1-201ENST00000454972 939 ntBASIC19.4■□□□□ 0.7
HOXC9P31274 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 CTBP2P4-201ENST00000513884 920 ntBASIC19.4■□□□□ 0.7
HOXC9P31274 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC19.4■□□□□ 0.7
HOXC9P31274 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC9P31274 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 DRG2-220ENST00000583355 891 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXC9P31274 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXC9P31274 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC9P31274 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms