Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 AL035414.1-201ENST00000451327 857 ntBASIC14.94□□□□□ -0.02
COL6A3P12111 PSME2P2-201ENST00000453033 700 ntBASIC14.94□□□□□ -0.02
COL6A3P12111 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A3P12111 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.94□□□□□ -0.02
COL6A3P12111 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A3P12111 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A3P12111 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A3P12111 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A3P12111 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A3P12111 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC14.94□□□□□ -0.02
COL6A3P12111 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A3P12111 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A3P12111 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL6A3P12111 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A3P12111 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A3P12111 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A3P12111 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC14.94□□□□□ -0.02
COL6A3P12111 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
COL6A3P12111 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A3P12111 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A3P12111 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A3P12111 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 DNM1P46-202ENST00000415963 882 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 TLE1P1-201ENST00000422965 589 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 GOLGA2P10-201ENST00000550961 817 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 PMM2-216ENST00000569958 698 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL6A3P12111 AC073869.4-201ENST00000620841 800 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A3P12111 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A3P12111 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 RNF7-202ENST00000393000 805 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 FAM21EP-201ENST00000417804 985 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC14.93□□□□□ -0.02
COL6A3P12111 SNORD3B-1-201ENST00000577988 758 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 AC090616.6-202ENST00000583601 1088 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 AL359091.4-201ENST00000610052 409 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC14.93□□□□□ -0.02
COL6A3P12111 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A3P12111 SALL4P5-201ENST00000419001 1760 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A3P12111 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 AL031590.1-202ENST00000641466 1737 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A3P12111 ALG10-202ENST00000538927 571 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A3P12111 AC015818.3-201ENST00000583797 589 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 AC026336.4-201ENST00000624565 1050 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 DUX4L33-201ENST00000635217 958 ntBASIC14.93□□□□□ -0.02
COL6A3P12111 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A3P12111 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A3P12111 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
COL6A3P12111 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 GCOM2-201ENST00000509133 1104 ntBASIC14.92□□□□□ -0.02
COL6A3P12111 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC14.92□□□□□ -0.02
COL6A3P12111 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
COL6A3P12111 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A3P12111 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 ODCP-201ENST00000459650 1639 ntBASIC14.92□□□□□ -0.02
COL6A3P12111 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
COL6A3P12111 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A3P12111 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
COL6A3P12111 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A3P12111 AC139100.2-201ENST00000616901 662 ntBASIC14.92□□□□□ -0.02
COL6A3P12111 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A3P12111 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A3P12111 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
COL6A3P12111 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms