Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.52■□□□□ 0.23
TPM1P09493 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
TPM1P09493 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.52■□□□□ 0.23
TPM1P09493 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.51■□□□□ 0.23
TPM1P09493 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM1P09493 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TPM1P09493 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TPM1P09493 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC16.51■□□□□ 0.23
TPM1P09493 SLC6A6P1-201ENST00000413933 1850 ntBASIC16.51■□□□□ 0.23
TPM1P09493 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
TPM1P09493 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM1P09493 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 HLA-V-204ENST00000476601 1289 ntBASIC16.51■□□□□ 0.23
TPM1P09493 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.51■□□□□ 0.23
TPM1P09493 YBX1P5-201ENST00000509441 847 ntBASIC16.51■□□□□ 0.23
TPM1P09493 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM1P09493 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TPM1P09493 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.51■□□□□ 0.23
TPM1P09493 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.51■□□□□ 0.23
TPM1P09493 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.51■□□□□ 0.23
TPM1P09493 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TPM1P09493 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM1P09493 AL157414.3-201ENST00000624276 1954 ntBASIC16.51■□□□□ 0.23
TPM1P09493 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM1P09493 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.51■□□□□ 0.23
TPM1P09493 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.51■□□□□ 0.23
TPM1P09493 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TPM1P09493 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.5■□□□□ 0.23
TPM1P09493 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TPM1P09493 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TPM1P09493 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.5■□□□□ 0.23
TPM1P09493 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.5■□□□□ 0.23
TPM1P09493 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.5■□□□□ 0.23
TPM1P09493 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 TIMM17BP1-201ENST00000545713 516 ntBASIC16.5■□□□□ 0.23
TPM1P09493 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
TPM1P09493 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.5■□□□□ 0.23
TPM1P09493 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TPM1P09493 AC051619.7-201ENST00000568314 623 ntBASIC16.5■□□□□ 0.23
TPM1P09493 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.5■□□□□ 0.23
TPM1P09493 AL109936.8-201ENST00000641772 604 ntBASIC16.5■□□□□ 0.23
TPM1P09493 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TPM1P09493 KRT8P22-201ENST00000562317 1415 ntBASIC16.5■□□□□ 0.23
TPM1P09493 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TPM1P09493 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.5■□□□□ 0.23
TPM1P09493 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TPM1P09493 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
TPM1P09493 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms