Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 AC133540.1-201ENST00000620845 1019 ntBASIC17.45■□□□□ 0.38
HLA-DOAP06340 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 AC011270.2-201ENST00000624293 2550 ntBASIC17.45■□□□□ 0.38
HLA-DOAP06340 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 AC091951.1-201ENST00000512854 2465 ntBASIC17.44■□□□□ 0.38
HLA-DOAP06340 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 CICP23-201ENST00000605013 2741 ntBASIC17.44■□□□□ 0.38
HLA-DOAP06340 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 HLA-DQB2-229ENST00000411527 1059 ntBASIC17.44■□□□□ 0.38
HLA-DOAP06340 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 AL353637.1-201ENST00000451571 732 ntBASIC17.44■□□□□ 0.38
HLA-DOAP06340 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HLA-DOAP06340 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.44■□□□□ 0.38
HLA-DOAP06340 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 CENPX-208ENST00000584347 799 ntTSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 AC016629.1-201ENST00000596579 586 ntBASIC17.43■□□□□ 0.38
HLA-DOAP06340 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HLA-DOAP06340 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
HLA-DOAP06340 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms