Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLDN9O95484 AC152010.1-201ENST00000415779 2006 ntBASIC14.44□□□□□ -0.1
CLDN9O95484 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
CLDN9O95484 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CLDN9O95484 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.44□□□□□ -0.1
CLDN9O95484 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.44□□□□□ -0.1
CLDN9O95484 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 AC004466.1-201ENST00000599515 1080 ntBASIC14.44□□□□□ -0.1
CLDN9O95484 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.44□□□□□ -0.1
CLDN9O95484 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLDN9O95484 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CLDN9O95484 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 AL136172.1-201ENST00000598590 1394 ntBASIC14.44□□□□□ -0.1
CLDN9O95484 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.44□□□□□ -0.1
CLDN9O95484 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CLDN9O95484 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLDN9O95484 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 AL138725.1-201ENST00000407347 1314 ntBASIC14.43□□□□□ -0.1
CLDN9O95484 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLDN9O95484 ST20-AS1-201ENST00000560255 4223 ntBASIC14.43□□□□□ -0.1
CLDN9O95484 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLDN9O95484 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.43□□□□□ -0.1
CLDN9O95484 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CLDN9O95484 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.43□□□□□ -0.1
CLDN9O95484 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 AC138761.1-201ENST00000584393 385 ntBASIC14.43□□□□□ -0.1
CLDN9O95484 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLDN9O95484 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
CLDN9O95484 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.43□□□□□ -0.1
CLDN9O95484 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLDN9O95484 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.43□□□□□ -0.1
CLDN9O95484 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.42□□□□□ -0.1
CLDN9O95484 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLDN9O95484 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms