Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 HTR7P1-202ENST00000624664 4411 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 CCL25-202ENST00000315626 450 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP4O75161 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 AC136604.1-202ENST00000425471 771 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 RHOQP2-201ENST00000449922 579 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC20.31■□□□□ 0.84
NPHP4O75161 IGKV1OR-2-201ENST00000457995 350 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 PRSS3P1-201ENST00000503996 742 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 RN7SKP155-201ENST00000516031 288 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC20.31■□□□□ 0.84
NPHP4O75161 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP4O75161 AC120498.7-201ENST00000562876 330 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP4O75161 ANKRD26P1-203ENST00000569528 966 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 AC006116.2-201ENST00000589958 988 ntBASIC20.31■□□□□ 0.84
NPHP4O75161 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
NPHP4O75161 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC20.31■□□□□ 0.84
NPHP4O75161 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP4O75161 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC20.31■□□□□ 0.84
NPHP4O75161 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
NPHP4O75161 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC20.31■□□□□ 0.84
NPHP4O75161 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NPHP4O75161 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NPHP4O75161 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP4O75161 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP4O75161 AC087481.3-201ENST00000602886 1894 ntBASIC20.3■□□□□ 0.84
NPHP4O75161 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
NPHP4O75161 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP4O75161 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NPHP4O75161 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC20.3■□□□□ 0.84
NPHP4O75161 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP4O75161 MAGEA7P-201ENST00000436482 942 ntBASIC20.3■□□□□ 0.84
NPHP4O75161 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC20.3■□□□□ 0.84
NPHP4O75161 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP4O75161 MIR2278-201ENST00000516344 96 ntBASIC20.3■□□□□ 0.84
NPHP4O75161 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 URB1-AS1-201ENST00000534991 831 ntBASIC20.3■□□□□ 0.84
NPHP4O75161 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC20.3■□□□□ 0.84
NPHP4O75161 SRP14-208ENST00000560773 468 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP4O75161 RN7SL556P-201ENST00000582856 298 ntBASIC20.3■□□□□ 0.84
NPHP4O75161 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC20.3■□□□□ 0.84
NPHP4O75161 AL136982.5-201ENST00000605222 294 ntBASIC20.3■□□□□ 0.84
NPHP4O75161 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 AC006504.5-208ENST00000588784 2401 ntBASIC20.3■□□□□ 0.84
NPHP4O75161 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NPHP4O75161 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NPHP4O75161 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.3■□□□□ 0.84
NPHP4O75161 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.3■□□□□ 0.84
NPHP4O75161 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 KRT8P18-201ENST00000413425 1445 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC20.29■□□□□ 0.84
NPHP4O75161 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC20.29■□□□□ 0.84
NPHP4O75161 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC20.29■□□□□ 0.84
NPHP4O75161 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 AC006987.1-201ENST00000413610 527 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 AC098657.1-201ENST00000416270 1135 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 AP000244.1-201ENST00000424582 201 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
NPHP4O75161 AC092573.1-201ENST00000433054 884 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 KRT18P62-201ENST00000446618 1287 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP4O75161 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
NPHP4O75161 AC142086.5-202ENST00000562500 217 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP4O75161 AL591424.3-201ENST00000614278 872 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC20.29■□□□□ 0.84
NPHP4O75161 MROH4P-201ENST00000431302 1578 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms