Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM1O00151 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM1O00151 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC14.3□□□□□ -0.12
PDLIM1O00151 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 AC055811.4-201ENST00000624039 1754 ntBASIC14.3□□□□□ -0.12
PDLIM1O00151 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM1O00151 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.3□□□□□ -0.12
PDLIM1O00151 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.3□□□□□ -0.12
PDLIM1O00151 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM1O00151 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
PDLIM1O00151 BANF1P1-201ENST00000553684 263 ntBASIC14.3□□□□□ -0.12
PDLIM1O00151 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM1O00151 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.3□□□□□ -0.12
PDLIM1O00151 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.3□□□□□ -0.12
PDLIM1O00151 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.3□□□□□ -0.12
PDLIM1O00151 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 BX324167.2-201ENST00000623717 3316 ntBASIC14.3□□□□□ -0.12
PDLIM1O00151 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
PDLIM1O00151 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
PDLIM1O00151 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
PDLIM1O00151 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PDLIM1O00151 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC14.3□□□□□ -0.12
PDLIM1O00151 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.29□□□□□ -0.12
PDLIM1O00151 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM1O00151 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM1O00151 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PDLIM1O00151 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
PDLIM1O00151 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PDLIM1O00151 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
PDLIM1O00151 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
PDLIM1O00151 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM1O00151 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.29□□□□□ -0.12
PDLIM1O00151 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.29□□□□□ -0.12
PDLIM1O00151 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 FAM86GP-201ENST00000448322 971 ntBASIC14.29□□□□□ -0.12
PDLIM1O00151 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.29□□□□□ -0.12
PDLIM1O00151 KLF2P3-201ENST00000451977 1087 ntBASIC14.29□□□□□ -0.12
PDLIM1O00151 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM1O00151 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM1O00151 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.29□□□□□ -0.12
PDLIM1O00151 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.29□□□□□ -0.12
PDLIM1O00151 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.29□□□□□ -0.12
PDLIM1O00151 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.29□□□□□ -0.12
PDLIM1O00151 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 AC012508.2-201ENST00000567613 1472 ntBASIC14.29□□□□□ -0.12
PDLIM1O00151 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
PDLIM1O00151 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM1O00151 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms