Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SYT6-210ENST00000641643 1587 ntBASIC43.89■■■■■ 4.62
SHROOM4Q9ULL8 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC43.89■■■■■ 4.62
SHROOM4Q9ULL8 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC43.89■■■■■ 4.62
SHROOM4Q9ULL8 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC43.89■■■■■ 4.62
SHROOM4Q9ULL8 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC43.88■■■■■ 4.62
SHROOM4Q9ULL8 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC43.88■■■■■ 4.62
SHROOM4Q9ULL8 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC43.88■■■■■ 4.62
SHROOM4Q9ULL8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC43.88■■■■■ 4.62
SHROOM4Q9ULL8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC43.88■■■■■ 4.61
SHROOM4Q9ULL8 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC43.88■■■■■ 4.61
SHROOM4Q9ULL8 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 SERBP1P1-201ENST00000396021 1160 ntBASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC43.87■■■■■ 4.61
SHROOM4Q9ULL8 SLC47A1P1-202ENST00000449666 945 ntBASIC43.86■■■■■ 4.61
SHROOM4Q9ULL8 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC43.86■■■■■ 4.61
SHROOM4Q9ULL8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC43.86■■■■■ 4.61
SHROOM4Q9ULL8 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC43.86■■■■■ 4.61
SHROOM4Q9ULL8 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC43.86■■■■■ 4.61
SHROOM4Q9ULL8 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC43.85■■■■■ 4.61
SHROOM4Q9ULL8 HACD1-201ENST00000326961 773 ntTSL 2 BASIC43.85■■■■■ 4.61
SHROOM4Q9ULL8 LBH-205ENST00000407930 756 ntTSL 2 BASIC43.85■■■■■ 4.61
SHROOM4Q9ULL8 PTCHD3P2-201ENST00000424937 1205 ntBASIC43.85■■■■■ 4.61
SHROOM4Q9ULL8 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC43.85■■■■■ 4.61
SHROOM4Q9ULL8 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC43.85■■■■■ 4.61
SHROOM4Q9ULL8 AK1-201ENST00000223836 736 ntTSL 3 BASIC43.84■■■■■ 4.61
SHROOM4Q9ULL8 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC43.84■■■■■ 4.61
SHROOM4Q9ULL8 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC43.84■■■■■ 4.61
SHROOM4Q9ULL8 AC022517.1-201ENST00000592429 346 ntBASIC43.84■■■■■ 4.61
SHROOM4Q9ULL8 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC43.84■■■■■ 4.61
SHROOM4Q9ULL8 ID1-201ENST00000376105 1233 ntBASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 SP2-202ENST00000613139 908 ntTSL 5 BASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC43.83■■■■■ 4.61
SHROOM4Q9ULL8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC43.82■■■■■ 4.61
SHROOM4Q9ULL8 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC43.82■■■■■ 4.61
SHROOM4Q9ULL8 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC43.82■■■■■ 4.61
SHROOM4Q9ULL8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC43.82■■■■■ 4.6
SHROOM4Q9ULL8 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC43.82■■■■■ 4.6
SHROOM4Q9ULL8 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC43.81■■■■■ 4.6
SHROOM4Q9ULL8 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC43.81■■■■■ 4.6
SHROOM4Q9ULL8 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC43.81■■■■■ 4.6
SHROOM4Q9ULL8 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC43.8■■■■■ 4.6
SHROOM4Q9ULL8 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC43.8■■■■■ 4.6
SHROOM4Q9ULL8 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC43.8■■■■■ 4.6
SHROOM4Q9ULL8 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC43.8■■■■■ 4.6
SHROOM4Q9ULL8 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC43.8■■■■■ 4.6
SHROOM4Q9ULL8 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC43.8■■■■■ 4.6
SHROOM4Q9ULL8 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC43.79■■■■■ 4.6
SHROOM4Q9ULL8 AC099791.1-201ENST00000416440 715 ntBASIC43.79■■■■■ 4.6
SHROOM4Q9ULL8 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC43.79■■■■■ 4.6
SHROOM4Q9ULL8 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC43.78■■■■■ 4.6
SHROOM4Q9ULL8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC43.78■■■■■ 4.6
SHROOM4Q9ULL8 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC43.78■■■■■ 4.6
SHROOM4Q9ULL8 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC43.78■■■■■ 4.6
SHROOM4Q9ULL8 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC43.78■■■■■ 4.6
SHROOM4Q9ULL8 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC43.77■■■■■ 4.6
SHROOM4Q9ULL8 CEBPA-AS1-201ENST00000592982 2198 ntBASIC43.77■■■■■ 4.6
SHROOM4Q9ULL8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC43.76■■■■■ 4.6
SHROOM4Q9ULL8 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC43.76■■■■■ 4.6
SHROOM4Q9ULL8 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC43.76■■■■■ 4.6
SHROOM4Q9ULL8 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC43.76■■■■■ 4.6
SHROOM4Q9ULL8 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC43.75■■■■■ 4.59
SHROOM4Q9ULL8 YBX1P1-201ENST00000445822 960 ntBASIC43.75■■■■■ 4.59
SHROOM4Q9ULL8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC43.75■■■■■ 4.59
SHROOM4Q9ULL8 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC43.74■■■■■ 4.59
SHROOM4Q9ULL8 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC43.74■■■■■ 4.59
SHROOM4Q9ULL8 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC43.73■■■■■ 4.59
SHROOM4Q9ULL8 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC43.73■■■■■ 4.59
SHROOM4Q9ULL8 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC43.72■■■■■ 4.59
SHROOM4Q9ULL8 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC43.72■■■■■ 4.59
SHROOM4Q9ULL8 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC43.71■■■■■ 4.59
SHROOM4Q9ULL8 AC136469.2-201ENST00000623944 1028 ntBASIC43.71■■■■■ 4.59
SHROOM4Q9ULL8 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC43.71■■■■■ 4.59
SHROOM4Q9ULL8 AC131274.2-201ENST00000580697 1507 ntBASIC43.71■■■■■ 4.59
SHROOM4Q9ULL8 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC43.71■■■■■ 4.59
SHROOM4Q9ULL8 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 MPST-208ENST00000628507 698 ntTSL 5 BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 AL031602.1-201ENST00000633169 911 ntBASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC43.7■■■■■ 4.59
SHROOM4Q9ULL8 AC145676.1-201ENST00000514988 2004 ntBASIC43.69■■■■■ 4.59
SHROOM4Q9ULL8 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC43.68■■■■■ 4.58
SHROOM4Q9ULL8 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC43.68■■■■■ 4.58
SHROOM4Q9ULL8 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC43.68■■■■■ 4.58
SHROOM4Q9ULL8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC43.68■■■■■ 4.58
SHROOM4Q9ULL8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC43.68■■■■■ 4.58
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms