Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX56Q9NY93 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.84■■□□□ 1.41
DDX56Q9NY93 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX56Q9NY93 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DDX56Q9NY93 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.83■■□□□ 1.41
DDX56Q9NY93 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
DDX56Q9NY93 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
DDX56Q9NY93 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.83■■□□□ 1.41
DDX56Q9NY93 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.83■■□□□ 1.41
DDX56Q9NY93 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.83■■□□□ 1.41
DDX56Q9NY93 AC010980.1-201ENST00000587192 1142 ntBASIC23.83■■□□□ 1.41
DDX56Q9NY93 THA1P-201ENST00000590384 1145 ntBASIC23.83■■□□□ 1.41
DDX56Q9NY93 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.83■■□□□ 1.41
DDX56Q9NY93 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.83■■□□□ 1.41
DDX56Q9NY93 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.83■■□□□ 1.4
DDX56Q9NY93 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX56Q9NY93 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.82■■□□□ 1.4
DDX56Q9NY93 LBH-205ENST00000407930 756 ntTSL 2 BASIC23.82■■□□□ 1.4
DDX56Q9NY93 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.82■■□□□ 1.4
DDX56Q9NY93 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.82■■□□□ 1.4
DDX56Q9NY93 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
DDX56Q9NY93 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.82■■□□□ 1.4
DDX56Q9NY93 AC012354.3-201ENST00000623734 483 ntBASIC23.82■■□□□ 1.4
DDX56Q9NY93 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DDX56Q9NY93 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
DDX56Q9NY93 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.81■■□□□ 1.4
DDX56Q9NY93 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
DDX56Q9NY93 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.81■■□□□ 1.4
DDX56Q9NY93 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
DDX56Q9NY93 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.81■■□□□ 1.4
DDX56Q9NY93 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX56Q9NY93 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX56Q9NY93 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX56Q9NY93 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
DDX56Q9NY93 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.81■■□□□ 1.4
DDX56Q9NY93 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
DDX56Q9NY93 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DDX56Q9NY93 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX56Q9NY93 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
DDX56Q9NY93 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.8■■□□□ 1.4
DDX56Q9NY93 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.8■■□□□ 1.4
DDX56Q9NY93 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX56Q9NY93 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
DDX56Q9NY93 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
DDX56Q9NY93 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
DDX56Q9NY93 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX56Q9NY93 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX56Q9NY93 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.79■■□□□ 1.4
DDX56Q9NY93 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.79■■□□□ 1.4
DDX56Q9NY93 MIR4281-201ENST00000580852 62 ntBASIC23.79■■□□□ 1.4
DDX56Q9NY93 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX56Q9NY93 ALDH1A3-203ENST00000557963 1670 ntBASIC23.79■■□□□ 1.4
DDX56Q9NY93 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
DDX56Q9NY93 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
DDX56Q9NY93 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
DDX56Q9NY93 AC012676.1-201ENST00000574705 1949 ntBASIC23.78■■□□□ 1.4
DDX56Q9NY93 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX56Q9NY93 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.78■■□□□ 1.4
DDX56Q9NY93 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.78■■□□□ 1.4
DDX56Q9NY93 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX56Q9NY93 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
DDX56Q9NY93 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DDX56Q9NY93 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
DDX56Q9NY93 AF131216.4-201ENST00000638924 1588 ntBASIC23.77■■□□□ 1.4
DDX56Q9NY93 ANOS2P-203ENST00000472227 1816 ntBASIC23.77■■□□□ 1.4
DDX56Q9NY93 AC068473.5-201ENST00000616428 2072 ntBASIC23.77■■□□□ 1.4
DDX56Q9NY93 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.77■■□□□ 1.4
DDX56Q9NY93 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX56Q9NY93 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
DDX56Q9NY93 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
DDX56Q9NY93 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.76■■□□□ 1.39
DDX56Q9NY93 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.76■■□□□ 1.39
DDX56Q9NY93 MIR4508-201ENST00000584178 70 ntBASIC23.76■■□□□ 1.39
DDX56Q9NY93 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX56Q9NY93 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX56Q9NY93 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
DDX56Q9NY93 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.75■■□□□ 1.39
DDX56Q9NY93 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX56Q9NY93 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.75■■□□□ 1.39
DDX56Q9NY93 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX56Q9NY93 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.75■■□□□ 1.39
DDX56Q9NY93 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.75■■□□□ 1.39
DDX56Q9NY93 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
DDX56Q9NY93 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.75■■□□□ 1.39
DDX56Q9NY93 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
DDX56Q9NY93 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
DDX56Q9NY93 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
DDX56Q9NY93 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
DDX56Q9NY93 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX56Q9NY93 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX56Q9NY93 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms