Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.48■■□□□ 1.51
CISHQ9NSE2 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
CISHQ9NSE2 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CISHQ9NSE2 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.48■■□□□ 1.51
CISHQ9NSE2 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.48■■□□□ 1.51
CISHQ9NSE2 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CISHQ9NSE2 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC24.47■■□□□ 1.51
CISHQ9NSE2 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CISHQ9NSE2 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.47■■□□□ 1.51
CISHQ9NSE2 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
CISHQ9NSE2 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
CISHQ9NSE2 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
CISHQ9NSE2 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC24.47■■□□□ 1.51
CISHQ9NSE2 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CISHQ9NSE2 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CISHQ9NSE2 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.47■■□□□ 1.51
CISHQ9NSE2 CREM-229ENST00000474362 1030 ntTSL 2 BASIC24.47■■□□□ 1.51
CISHQ9NSE2 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CISHQ9NSE2 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CISHQ9NSE2 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.46■■□□□ 1.51
CISHQ9NSE2 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CISHQ9NSE2 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CISHQ9NSE2 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CISHQ9NSE2 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CISHQ9NSE2 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.46■■□□□ 1.51
CISHQ9NSE2 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.46■■□□□ 1.51
CISHQ9NSE2 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.51
CISHQ9NSE2 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CISHQ9NSE2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CISHQ9NSE2 GUSBP5-201ENST00000418136 578 ntBASIC24.45■■□□□ 1.5
CISHQ9NSE2 TSPY9P-201ENST00000440215 945 ntBASIC24.45■■□□□ 1.5
CISHQ9NSE2 TSPY11P-201ENST00000442607 1045 ntBASIC24.45■■□□□ 1.5
CISHQ9NSE2 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.45■■□□□ 1.5
CISHQ9NSE2 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC24.45■■□□□ 1.5
CISHQ9NSE2 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.45■■□□□ 1.5
CISHQ9NSE2 ALDH1A3-203ENST00000557963 1670 ntBASIC24.45■■□□□ 1.5
CISHQ9NSE2 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.45■■□□□ 1.5
CISHQ9NSE2 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CISHQ9NSE2 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CISHQ9NSE2 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
CISHQ9NSE2 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
CISHQ9NSE2 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.44■■□□□ 1.5
CISHQ9NSE2 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CISHQ9NSE2 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CISHQ9NSE2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.44■■□□□ 1.5
CISHQ9NSE2 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CISHQ9NSE2 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.44■■□□□ 1.5
CISHQ9NSE2 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CISHQ9NSE2 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CISHQ9NSE2 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CISHQ9NSE2 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC24.43■■□□□ 1.5
CISHQ9NSE2 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.43■■□□□ 1.5
CISHQ9NSE2 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.43■■□□□ 1.5
CISHQ9NSE2 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 UNC93B8-201ENST00000511903 705 ntBASIC24.43■■□□□ 1.5
CISHQ9NSE2 MIR6722-201ENST00000617286 78 ntBASIC24.43■■□□□ 1.5
CISHQ9NSE2 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC24.43■■□□□ 1.5
CISHQ9NSE2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CISHQ9NSE2 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CISHQ9NSE2 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CISHQ9NSE2 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CISHQ9NSE2 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.42■■□□□ 1.5
CISHQ9NSE2 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CISHQ9NSE2 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CISHQ9NSE2 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CISHQ9NSE2 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC24.4■■□□□ 1.5
CISHQ9NSE2 CLTA-206ENST00000466396 695 ntTSL 2 BASIC24.4■■□□□ 1.5
CISHQ9NSE2 MTDHP2-201ENST00000601468 714 ntBASIC24.4■■□□□ 1.5
CISHQ9NSE2 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.4■■□□□ 1.5
CISHQ9NSE2 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
CISHQ9NSE2 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CISHQ9NSE2 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CISHQ9NSE2 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CISHQ9NSE2 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.39■■□□□ 1.5
CISHQ9NSE2 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CISHQ9NSE2 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC24.39■■□□□ 1.49
CISHQ9NSE2 AC010997.5-201ENST00000609182 354 ntBASIC24.39■■□□□ 1.49
CISHQ9NSE2 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
CISHQ9NSE2 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
CISHQ9NSE2 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CISHQ9NSE2 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CISHQ9NSE2 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.39■■□□□ 1.49
CISHQ9NSE2 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.39■■□□□ 1.49
CISHQ9NSE2 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms