Protein–RNA interactions for Protein: Q9H3P2

NELFA, Negative elongation factor A, humanhuman

Predictions only

Length 528 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NELFAQ9H3P2 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
NELFAQ9H3P2 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NELFAQ9H3P2 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
NELFAQ9H3P2 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
NELFAQ9H3P2 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
NELFAQ9H3P2 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.31■□□□□ 0.84
NELFAQ9H3P2 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
NELFAQ9H3P2 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NELFAQ9H3P2 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 AL022069.1-201ENST00000568025 1636 ntBASIC20.29■□□□□ 0.84
NELFAQ9H3P2 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
NELFAQ9H3P2 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NELFAQ9H3P2 ABCB10P4-201ENST00000566803 2184 ntBASIC20.27■□□□□ 0.84
NELFAQ9H3P2 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
NELFAQ9H3P2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
NELFAQ9H3P2 GUSBP5-201ENST00000418136 578 ntBASIC20.27■□□□□ 0.84
NELFAQ9H3P2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.27■□□□□ 0.84
NELFAQ9H3P2 MIR4787-201ENST00000607364 84 ntBASIC20.27■□□□□ 0.84
NELFAQ9H3P2 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NELFAQ9H3P2 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NELFAQ9H3P2 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NELFAQ9H3P2 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 KRT125P-201ENST00000546827 989 ntBASIC20.26■□□□□ 0.83
NELFAQ9H3P2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 AC131274.2-201ENST00000580697 1507 ntBASIC20.26■□□□□ 0.83
NELFAQ9H3P2 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NELFAQ9H3P2 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NELFAQ9H3P2 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
NELFAQ9H3P2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NELFAQ9H3P2 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms