Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.86■□□□□ 0.77
NKX3-1Q99801 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NKX3-1Q99801 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.85■□□□□ 0.77
NKX3-1Q99801 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
NKX3-1Q99801 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX3-1Q99801 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX3-1Q99801 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.85■□□□□ 0.77
NKX3-1Q99801 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.85■□□□□ 0.77
NKX3-1Q99801 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX3-1Q99801 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NKX3-1Q99801 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NKX3-1Q99801 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX3-1Q99801 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
NKX3-1Q99801 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX3-1Q99801 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.84■□□□□ 0.77
NKX3-1Q99801 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX3-1Q99801 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.84■□□□□ 0.77
NKX3-1Q99801 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NKX3-1Q99801 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NKX3-1Q99801 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
NKX3-1Q99801 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NKX3-1Q99801 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NKX3-1Q99801 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NKX3-1Q99801 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NKX3-1Q99801 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NKX3-1Q99801 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.83■□□□□ 0.77
NKX3-1Q99801 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NKX3-1Q99801 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NKX3-1Q99801 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.83■□□□□ 0.76
NKX3-1Q99801 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NKX3-1Q99801 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NKX3-1Q99801 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NKX3-1Q99801 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.83■□□□□ 0.76
NKX3-1Q99801 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
NKX3-1Q99801 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.82■□□□□ 0.76
NKX3-1Q99801 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.82■□□□□ 0.76
NKX3-1Q99801 NTF6A-201ENST00000591175 560 ntBASIC19.82■□□□□ 0.76
NKX3-1Q99801 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
NKX3-1Q99801 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
NKX3-1Q99801 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.82■□□□□ 0.76
NKX3-1Q99801 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
NKX3-1Q99801 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NKX3-1Q99801 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.81■□□□□ 0.76
NKX3-1Q99801 AL592293.1-201ENST00000502889 1188 ntBASIC19.81■□□□□ 0.76
NKX3-1Q99801 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.81■□□□□ 0.76
NKX3-1Q99801 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
NKX3-1Q99801 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NKX3-1Q99801 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NKX3-1Q99801 AC079834.2-201ENST00000609776 1949 ntBASIC19.8■□□□□ 0.76
NKX3-1Q99801 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NKX3-1Q99801 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NKX3-1Q99801 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
NKX3-1Q99801 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX3-1Q99801 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX3-1Q99801 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NKX3-1Q99801 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
NKX3-1Q99801 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 ANOS2P-203ENST00000472227 1816 ntBASIC19.79■□□□□ 0.76
NKX3-1Q99801 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.79■□□□□ 0.76
NKX3-1Q99801 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NKX3-1Q99801 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NKX3-1Q99801 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NKX3-1Q99801 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.79■□□□□ 0.76
NKX3-1Q99801 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NKX3-1Q99801 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NKX3-1Q99801 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX3-1Q99801 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.78■□□□□ 0.76
NKX3-1Q99801 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NKX3-1Q99801 RPS2P7-201ENST00000447334 885 ntBASIC19.78■□□□□ 0.76
NKX3-1Q99801 EP400NL-214ENST00000641289 2402 ntBASIC19.78■□□□□ 0.76
NKX3-1Q99801 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX3-1Q99801 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NKX3-1Q99801 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NKX3-1Q99801 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.77■□□□□ 0.76
NKX3-1Q99801 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NKX3-1Q99801 U85056.1-201ENST00000616429 682 ntBASIC19.77■□□□□ 0.76
NKX3-1Q99801 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms