Protein–RNA interactions for Protein: Q92890

UFD1, Ubiquitin recognition factor in ER-associated degradation protein 1, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1Q92890 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.37■□□□□ 0.85
UFD1Q92890 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.37■□□□□ 0.85
UFD1Q92890 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
UFD1Q92890 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
UFD1Q92890 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.36■□□□□ 0.85
UFD1Q92890 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.36■□□□□ 0.85
UFD1Q92890 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
UFD1Q92890 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UFD1Q92890 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.35■□□□□ 0.85
UFD1Q92890 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.35■□□□□ 0.85
UFD1Q92890 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.35■□□□□ 0.85
UFD1Q92890 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.35■□□□□ 0.85
UFD1Q92890 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
UFD1Q92890 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.35■□□□□ 0.85
UFD1Q92890 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.34■□□□□ 0.85
UFD1Q92890 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.34■□□□□ 0.85
UFD1Q92890 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.34■□□□□ 0.85
UFD1Q92890 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.34■□□□□ 0.85
UFD1Q92890 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
UFD1Q92890 SMPD5-203ENST00000639008 1464 ntBASIC20.34■□□□□ 0.85
UFD1Q92890 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
UFD1Q92890 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
UFD1Q92890 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
UFD1Q92890 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UFD1Q92890 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.85
UFD1Q92890 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
UFD1Q92890 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.33■□□□□ 0.85
UFD1Q92890 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.33■□□□□ 0.84
UFD1Q92890 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UFD1Q92890 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UFD1Q92890 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UFD1Q92890 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
UFD1Q92890 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UFD1Q92890 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
UFD1Q92890 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
UFD1Q92890 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UFD1Q92890 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
UFD1Q92890 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UFD1Q92890 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.32■□□□□ 0.84
UFD1Q92890 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UFD1Q92890 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
UFD1Q92890 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.31■□□□□ 0.84
UFD1Q92890 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 ECEL1P1-201ENST00000373592 1742 ntBASIC20.31■□□□□ 0.84
UFD1Q92890 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
UFD1Q92890 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 CR559946.2-201ENST00000623684 991 ntBASIC20.31■□□□□ 0.84
UFD1Q92890 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
UFD1Q92890 AC137767.1-201ENST00000602918 1920 ntBASIC20.31■□□□□ 0.84
UFD1Q92890 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UFD1Q92890 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.3■□□□□ 0.84
UFD1Q92890 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.3■□□□□ 0.84
UFD1Q92890 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.3■□□□□ 0.84
UFD1Q92890 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
UFD1Q92890 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UFD1Q92890 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
UFD1Q92890 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.29■□□□□ 0.84
UFD1Q92890 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.29■□□□□ 0.84
UFD1Q92890 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.29■□□□□ 0.84
UFD1Q92890 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
UFD1Q92890 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.29■□□□□ 0.84
UFD1Q92890 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.29■□□□□ 0.84
UFD1Q92890 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
UFD1Q92890 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.28■□□□□ 0.84
UFD1Q92890 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms