Protein–RNA interactions for Protein: Q8NEM2

SHCBP1, SHC SH2 domain-binding protein 1, humanhuman

Predictions only

Length 672 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1Q8NEM2 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SHCBP1Q8NEM2 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
SHCBP1Q8NEM2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHCBP1Q8NEM2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC26.22■■□□□ 1.79
SHCBP1Q8NEM2 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
SHCBP1Q8NEM2 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC26.22■■□□□ 1.79
SHCBP1Q8NEM2 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 AC097381.1-201ENST00000429019 1296 ntBASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 AC136469.2-201ENST00000623944 1028 ntBASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.21■■□□□ 1.79
SHCBP1Q8NEM2 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
SHCBP1Q8NEM2 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
SHCBP1Q8NEM2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
SHCBP1Q8NEM2 HES6-206ENST00000409574 738 ntTSL 2 BASIC26.2■■□□□ 1.78
SHCBP1Q8NEM2 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC26.2■■□□□ 1.78
SHCBP1Q8NEM2 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.2■■□□□ 1.78
SHCBP1Q8NEM2 AL161729.1-201ENST00000604104 1402 ntBASIC26.2■■□□□ 1.78
SHCBP1Q8NEM2 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
SHCBP1Q8NEM2 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 AC008764.7-201ENST00000593779 1081 ntBASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
SHCBP1Q8NEM2 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SHCBP1Q8NEM2 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 AC099791.1-201ENST00000416440 715 ntBASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SHCBP1Q8NEM2 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SHCBP1Q8NEM2 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 IRS3P-201ENST00000223076 1006 ntBASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 AC006455.2-201ENST00000429931 906 ntBASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SHCBP1Q8NEM2 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
SHCBP1Q8NEM2 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SHCBP1Q8NEM2 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SHCBP1Q8NEM2 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
SHCBP1Q8NEM2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms