Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MIR3181-201ENST00000578512 73 ntBASIC27.57■■■□□ 2
SMC1BQ8NDV3 TERF1P2-201ENST00000583350 1212 ntBASIC27.57■■■□□ 2
SMC1BQ8NDV3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.57■■■□□ 2
SMC1BQ8NDV3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SMC1BQ8NDV3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC27.56■■■□□ 2
SMC1BQ8NDV3 PPP1R14BP3-201ENST00000509033 445 ntBASIC27.56■■■□□ 2
SMC1BQ8NDV3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.56■■■□□ 2
SMC1BQ8NDV3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC27.56■■■□□ 2
SMC1BQ8NDV3 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC27.56■■■□□ 2
SMC1BQ8NDV3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC27.56■■■□□ 2
SMC1BQ8NDV3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
SMC1BQ8NDV3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
SMC1BQ8NDV3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC27.55■■■□□ 2
SMC1BQ8NDV3 AC006455.2-201ENST00000429931 906 ntBASIC27.55■■■□□ 2
SMC1BQ8NDV3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC27.55■■■□□ 2
SMC1BQ8NDV3 CD99P1-205ENST00000527459 561 ntBASIC27.55■■■□□ 2
SMC1BQ8NDV3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC27.55■■■□□ 2
SMC1BQ8NDV3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC27.54■■■□□ 2
SMC1BQ8NDV3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC27.54■■■□□ 2
SMC1BQ8NDV3 AC006015.1-201ENST00000429970 570 ntBASIC27.54■■■□□ 2
SMC1BQ8NDV3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC27.54■■■□□ 2
SMC1BQ8NDV3 AL109923.1-201ENST00000618799 583 ntBASIC27.54■■■□□ 2
SMC1BQ8NDV3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC27.53■■■□□ 2
SMC1BQ8NDV3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC27.53■■■□□ 2
SMC1BQ8NDV3 LINC02228-203ENST00000641970 1355 ntBASIC27.53■■■□□ 2
SMC1BQ8NDV3 MIR572-201ENST00000384983 95 ntBASIC27.53■■■□□ 2
SMC1BQ8NDV3 MAP2K4P1-201ENST00000438453 1195 ntBASIC27.53■■■□□ 2
SMC1BQ8NDV3 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC27.53■■■□□ 2
SMC1BQ8NDV3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.52■■■□□ 2
SMC1BQ8NDV3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC27.52■■■□□ 2
SMC1BQ8NDV3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC27.52■■■□□ 2
SMC1BQ8NDV3 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.52■■■□□ 2
SMC1BQ8NDV3 AC026185.1-201ENST00000445748 174 ntBASIC27.52■■■□□ 2
SMC1BQ8NDV3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC27.52■■■□□ 2
SMC1BQ8NDV3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.52■■■□□ 2
SMC1BQ8NDV3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.52■■■□□ 2
SMC1BQ8NDV3 C17orf82-201ENST00000623772 1530 ntBASIC27.51■■■□□ 2
SMC1BQ8NDV3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■■□□ 2
SMC1BQ8NDV3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
SMC1BQ8NDV3 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC27.51■■□□□ 1.99
SMC1BQ8NDV3 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC27.51■■□□□ 1.99
SMC1BQ8NDV3 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
SMC1BQ8NDV3 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SMC1BQ8NDV3 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
SMC1BQ8NDV3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 TSPY20P-201ENST00000450910 630 ntBASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC27.5■■□□□ 1.99
SMC1BQ8NDV3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 AC009086.3-201ENST00000623486 1008 ntBASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
SMC1BQ8NDV3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 GAS2L1P2-201ENST00000436355 1356 ntBASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
SMC1BQ8NDV3 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 AC016769.1-201ENST00000409132 1010 ntBASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 AC006970.2-201ENST00000450065 779 ntBASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
SMC1BQ8NDV3 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SMC1BQ8NDV3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SMC1BQ8NDV3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC27.46■■□□□ 1.99
SMC1BQ8NDV3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC27.46■■□□□ 1.99
SMC1BQ8NDV3 IGHV3-19-201ENST00000521488 291 ntBASIC27.46■■□□□ 1.99
SMC1BQ8NDV3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.46■■□□□ 1.99
SMC1BQ8NDV3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SMC1BQ8NDV3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC27.45■■□□□ 1.99
SMC1BQ8NDV3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.45■■□□□ 1.98
SMC1BQ8NDV3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SMC1BQ8NDV3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC27.45■■□□□ 1.98
SMC1BQ8NDV3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC27.45■■□□□ 1.98
SMC1BQ8NDV3 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC27.45■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms