Protein–RNA interactions for Protein: Q8N4T4

ARHGEF39, Rho guanine nucleotide exchange factor 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF39Q8N4T4 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ARHGEF39Q8N4T4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ARHGEF39Q8N4T4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ARHGEF39Q8N4T4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ARHGEF39Q8N4T4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ARHGEF39Q8N4T4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.73■■□□□ 1.07
ARHGEF39Q8N4T4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.73■■□□□ 1.07
ARHGEF39Q8N4T4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ARHGEF39Q8N4T4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 AC141586.4-201ENST00000624558 1573 ntBASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ARHGEF39Q8N4T4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 LINC01124-201ENST00000409786 2117 ntBASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.71■■□□□ 1.07
ARHGEF39Q8N4T4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.7■■□□□ 1.06
ARHGEF39Q8N4T4 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 AC005703.6-201ENST00000623265 1329 ntBASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 ALDH1A3-203ENST00000557963 1670 ntBASIC21.69■■□□□ 1.06
ARHGEF39Q8N4T4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 AL512631.2-201ENST00000604634 923 ntBASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
ARHGEF39Q8N4T4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.67■■□□□ 1.06
ARHGEF39Q8N4T4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 AL356740.2-201ENST00000601559 647 ntBASIC21.66■■□□□ 1.06
ARHGEF39Q8N4T4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 AC131281.2-201ENST00000520478 145 ntBASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 AC004812.2-201ENST00000611079 2094 ntBASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.65■■□□□ 1.06
ARHGEF39Q8N4T4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
ARHGEF39Q8N4T4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.64■■□□□ 1.05
ARHGEF39Q8N4T4 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.64■■□□□ 1.05
ARHGEF39Q8N4T4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.64■■□□□ 1.05
ARHGEF39Q8N4T4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.64■■□□□ 1.05
ARHGEF39Q8N4T4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
ARHGEF39Q8N4T4 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ARHGEF39Q8N4T4 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ARHGEF39Q8N4T4 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
ARHGEF39Q8N4T4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms