Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.76■□□□□ 0.754e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.67■□□□□ 0.744e-6■□□□□ 8.2
DDX42Q86XP3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.4■□□□□ 0.74e-6■□□□□ 8.2
DDX42Q86XP3 MTA1-208ENST00000438610 2144 ntTSL 1 (best)19.25■□□□□ 0.674e-6■□□□□ 8.2
DDX42Q86XP3 TMC6-210ENST00000588792 843 ntTSL 219.16■□□□□ 0.663e-8■□□□□ 8.2
DDX42Q86XP3 DDX39A-212ENST00000590260 988 ntTSL 219.15■□□□□ 0.664e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.13■□□□□ 0.654e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-217ENST00000578941 1079 ntTSL 1 (best)19.02■□□□□ 0.644e-6■□□□□ 8.2
DDX42Q86XP3 MTA1-206ENST00000434050 2050 ntTSL 1 (best)19.01■□□□□ 0.634e-6■□□□□ 8.2
DDX42Q86XP3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.633e-7■□□□□ 8.2
DDX42Q86XP3 C17orf62-226ENST00000582608 559 ntTSL 418.93■□□□□ 0.624e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.56■□□□□ 0.564e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-229ENST00000583359 896 ntTSL 518.4■□□□□ 0.544e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.494e-6■□□□□ 8.2
DDX42Q86XP3 TMC6-211ENST00000589271 1099 ntTSL 517.94■□□□□ 0.463e-8■□□□□ 8.2
DDX42Q86XP3 C17orf62-222ENST00000582395 565 ntTSL 417.91■□□□□ 0.464e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-213ENST00000578064 548 ntTSL 417.75■□□□□ 0.434e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-207ENST00000577471 573 ntTSL 417.73■□□□□ 0.434e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-225ENST00000582545 470 ntTSL 417.64■□□□□ 0.414e-6■□□□□ 8.2
DDX42Q86XP3 TMC6-205ENST00000586126 821 ntTSL 317.49■□□□□ 0.393e-8■□□□□ 8.2
DDX42Q86XP3 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.26■□□□□ 0.354e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-232ENST00000584024 1965 ntTSL 217.19■□□□□ 0.344e-6■□□□□ 8.2
DDX42Q86XP3 TMC6-223ENST00000592594 551 ntTSL 417.08■□□□□ 0.323e-8■□□□□ 8.2
DDX42Q86XP3 C17orf62-209ENST00000577707 534 ntTSL 416.86■□□□□ 0.294e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-212ENST00000577888 617 ntTSL 216.33■□□□□ 0.24e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.24e-6■□□□□ 8.2
DDX42Q86XP3 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.174e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-209ENST00000589318 1903 ntTSL 1 (best)16.05■□□□□ 0.164e-6■□□□□ 8.2
DDX42Q86XP3 TMC6-207ENST00000586697 571 ntTSL 415.65■□□□□ 0.13e-8■□□□□ 8.2
DDX42Q86XP3 DDX39A-221ENST00000593026 657 ntTSL 315.65■□□□□ 0.14e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-208ENST00000588692 1478 ntTSL 515.31■□□□□ 0.044e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-217ENST00000592391 1080 ntTSL 515.3■□□□□ 0.044e-6■□□□□ 8.2
DDX42Q86XP3 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.023e-7■□□□□ 8.2
DDX42Q86XP3 TMC6-221ENST00000592063 743 ntTSL 514.81□□□□□ -0.043e-8■□□□□ 8.2
DDX42Q86XP3 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.074e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.124e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-214ENST00000578895 3154 ntTSL 213.94□□□□□ -0.184e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-213ENST00000590315 566 ntTSL 513.44□□□□□ -0.264e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-202ENST00000324340 1355 ntTSL 1 (best)13.07□□□□□ -0.324e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-210ENST00000577732 1053 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.354e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-206ENST00000577436 1079 ntTSL 3 BASIC12.77□□□□□ -0.374e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC12.73□□□□□ -0.374e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-219ENST00000592927 823 ntTSL 312.34□□□□□ -0.434e-6■□□□□ 8.2
DDX42Q86XP3 DHX15-201ENST00000336812 2994 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.464e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-237ENST00000585044 4327 ntTSL 211.97□□□□□ -0.494e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-210ENST00000589675 829 ntTSL 311.85□□□□□ -0.514e-6■□□□□ 8.2
DDX42Q86XP3 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC11.61□□□□□ -0.554e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-215ENST00000578913 563 ntTSL 2 BASIC11.5□□□□□ -0.574e-6■□□□□ 8.2
DDX42Q86XP3 DDX39A-203ENST00000454233 922 ntTSL 3 BASIC11.32□□□□□ -0.64e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-233ENST00000584408 497 ntTSL 411.28□□□□□ -0.64e-6■□□□□ 8.2
DDX42Q86XP3 C17orf62-211ENST00000577834 540 ntTSL 410.98□□□□□ -0.654e-6■□□□□ 8.2
DDX42Q86XP3 CDYL-201ENST00000328908 3419 ntTSL 1 (best) BASIC10.89□□□□□ -0.673e-7■□□□□ 8.2
DDX42Q86XP3 C17orf62-220ENST00000580560 564 ntTSL 4 BASIC10.61□□□□□ -0.714e-6■□□□□ 8.2
DDX42Q86XP3 CDYL-208ENST00000483019 773 ntTSL 210.27□□□□□ -0.773e-7■□□□□ 8.2
DDX42Q86XP3 C17orf62-218ENST00000579444 470 ntTSL 29.95□□□□□ -0.824e-6■□□□□ 8.2
DDX42Q86XP3 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.934e-6■□□□□ 8.2
DDX42Q86XP3 CDYL-204ENST00000440139 690 ntTSL 38.79□□□□□ -13e-7■□□□□ 8.2
DDX42Q86XP3 C17orf62-236ENST00000584891 468 ntTSL 38.16□□□□□ -1.14e-6■□□□□ 8.2
DDX42Q86XP3 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.114e-6■□□□□ 8.2
DDX42Q86XP3 CDYL-209ENST00000491864 614 ntTSL 56.94□□□□□ -1.33e-7■□□□□ 8.2
DDX42Q86XP3 NUP214-224ENST00000530863 560 ntTSL 55.26□□□□□ -1.574e-6■□□□□ 8.2
DDX42Q86XP3 DHX15-204ENST00000508032 3028 ntTSL 1 (best)4.23□□□□□ -1.734e-6■□□□□ 8.2
DDX42Q86XP3 XPO1-211ENST00000451765 643 ntTSL 317.05■□□□□ 0.327e-13■□□□□ 8.2
DDX42Q86XP3 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.44□□□□□ -1.227e-13■□□□□ 8.2
DDX42Q86XP3 MED15-210ENST00000432052 598 ntTSL 422.3■■□□□ 1.162e-7■□□□□ 8.1
DDX42Q86XP3 MED15-225ENST00000477824 571 ntTSL 521.98■■□□□ 1.112e-7■□□□□ 8.1
DDX42Q86XP3 MED15-215ENST00000444094 551 ntTSL 420.9■□□□□ 0.942e-7■□□□□ 8.1
DDX42Q86XP3 MED15-205ENST00000414658 717 ntTSL 319.67■□□□□ 0.742e-7■□□□□ 8.1
DDX42Q86XP3 MED15-227ENST00000486656 577 ntTSL 419.67■□□□□ 0.742e-7■□□□□ 8.1
DDX42Q86XP3 MED15-217ENST00000445987 590 ntTSL 416.96■□□□□ 0.312e-7■□□□□ 8.1
DDX42Q86XP3 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.32e-7■□□□□ 8.1
DDX42Q86XP3 MED15-211ENST00000433831 3267 ntTSL 515.84■□□□□ 0.132e-7■□□□□ 8.1
DDX42Q86XP3 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC15.76■□□□□ 0.112e-7■□□□□ 8.1
DDX42Q86XP3 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC15.35■□□□□ 0.052e-7■□□□□ 8.1
DDX42Q86XP3 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.072e-7■□□□□ 8.1
DDX42Q86XP3 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.112e-7■□□□□ 8.1
DDX42Q86XP3 MT-TF-201ENST00000387314 71 ntBASIC1.28□□□□□ -2.24e-49■□□□□ 8
Retrieved 77 of 2,477 protein–RNA pairs in 13.4 ms