Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 ID1-201ENST00000376105 1233 ntBASIC31.57■■■□□ 2.64
NPHP3Q7Z494 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 RAB43-208ENST00000615093 783 ntTSL 5 BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP3Q7Z494 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
NPHP3Q7Z494 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
NPHP3Q7Z494 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
NPHP3Q7Z494 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
NPHP3Q7Z494 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP3Q7Z494 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC31.54■■■□□ 2.64
NPHP3Q7Z494 AC009086.3-201ENST00000623486 1008 ntBASIC31.54■■■□□ 2.64
NPHP3Q7Z494 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP3Q7Z494 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC31.54■■■□□ 2.64
NPHP3Q7Z494 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP3Q7Z494 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
NPHP3Q7Z494 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC31.53■■■□□ 2.64
NPHP3Q7Z494 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP3Q7Z494 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP3Q7Z494 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP3Q7Z494 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
NPHP3Q7Z494 DLX3-202ENST00000512495 834 ntTSL 2 BASIC31.52■■■□□ 2.64
NPHP3Q7Z494 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP3Q7Z494 NME4-202ENST00000382940 766 ntTSL 3 BASIC31.51■■■□□ 2.64
NPHP3Q7Z494 AC027612.3-201ENST00000413684 1047 ntBASIC31.51■■■□□ 2.64
NPHP3Q7Z494 AC004911.1-201ENST00000416316 871 ntBASIC31.51■■■□□ 2.64
NPHP3Q7Z494 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC31.51■■■□□ 2.64
NPHP3Q7Z494 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC31.51■■■□□ 2.64
NPHP3Q7Z494 NME4-211ENST00000620944 1193 ntTSL 2 BASIC31.51■■■□□ 2.64
NPHP3Q7Z494 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.64
NPHP3Q7Z494 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.64
NPHP3Q7Z494 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.63
NPHP3Q7Z494 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
NPHP3Q7Z494 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.51■■■□□ 2.63
NPHP3Q7Z494 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 DENND3-207ENST00000518347 850 ntTSL 2 BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 ERN1-208ENST00000606895 2068 ntBASIC31.5■■■□□ 2.63
NPHP3Q7Z494 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
NPHP3Q7Z494 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 AC123595.1-201ENST00000440769 1046 ntBASIC31.49■■■□□ 2.63
NPHP3Q7Z494 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC31.49■■■□□ 2.63
NPHP3Q7Z494 AC126544.1-201ENST00000580842 1059 ntBASIC31.49■■■□□ 2.63
NPHP3Q7Z494 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
NPHP3Q7Z494 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC31.47■■■□□ 2.63
NPHP3Q7Z494 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC31.47■■■□□ 2.63
NPHP3Q7Z494 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC31.47■■■□□ 2.63
NPHP3Q7Z494 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP3Q7Z494 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
NPHP3Q7Z494 AL358852.1-201ENST00000623174 1268 ntBASIC31.47■■■□□ 2.63
NPHP3Q7Z494 TSPY26P-201ENST00000476365 1326 ntBASIC31.46■■■□□ 2.63
NPHP3Q7Z494 AC142086.6-201ENST00000621154 1765 ntBASIC31.46■■■□□ 2.63
NPHP3Q7Z494 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC31.46■■■□□ 2.63
NPHP3Q7Z494 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
NPHP3Q7Z494 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
NPHP3Q7Z494 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
NPHP3Q7Z494 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
NPHP3Q7Z494 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.62
NPHP3Q7Z494 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC31.45■■■□□ 2.62
NPHP3Q7Z494 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP3Q7Z494 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
NPHP3Q7Z494 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.44■■■□□ 2.62
NPHP3Q7Z494 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC31.44■■■□□ 2.62
NPHP3Q7Z494 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP3Q7Z494 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.44■■■□□ 2.62
NPHP3Q7Z494 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC31.43■■■□□ 2.62
NPHP3Q7Z494 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms