Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXF1Q12946 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXF1Q12946 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.75■□□□□ 0.91
FOXF1Q12946 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.75■□□□□ 0.91
FOXF1Q12946 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.75■□□□□ 0.91
FOXF1Q12946 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
FOXF1Q12946 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.74■□□□□ 0.91
FOXF1Q12946 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
FOXF1Q12946 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.74■□□□□ 0.91
FOXF1Q12946 ABCB10P4-201ENST00000566803 2184 ntBASIC20.74■□□□□ 0.91
FOXF1Q12946 MTDHP2-201ENST00000601468 714 ntBASIC20.74■□□□□ 0.91
FOXF1Q12946 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
FOXF1Q12946 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
FOXF1Q12946 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
FOXF1Q12946 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
FOXF1Q12946 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
FOXF1Q12946 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
FOXF1Q12946 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXF1Q12946 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXF1Q12946 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
FOXF1Q12946 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
FOXF1Q12946 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXF1Q12946 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
FOXF1Q12946 UNC93B8-201ENST00000511903 705 ntBASIC20.73■□□□□ 0.91
FOXF1Q12946 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.73■□□□□ 0.91
FOXF1Q12946 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXF1Q12946 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.73■□□□□ 0.91
FOXF1Q12946 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
FOXF1Q12946 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
FOXF1Q12946 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.72■□□□□ 0.91
FOXF1Q12946 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 ALDH1A3-203ENST00000557963 1670 ntBASIC20.72■□□□□ 0.91
FOXF1Q12946 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
FOXF1Q12946 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXF1Q12946 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXF1Q12946 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXF1Q12946 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXF1Q12946 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.71■□□□□ 0.91
FOXF1Q12946 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
FOXF1Q12946 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
FOXF1Q12946 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
FOXF1Q12946 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXF1Q12946 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.71■□□□□ 0.91
FOXF1Q12946 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.71■□□□□ 0.91
FOXF1Q12946 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
FOXF1Q12946 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXF1Q12946 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
FOXF1Q12946 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXF1Q12946 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.7■□□□□ 0.9
FOXF1Q12946 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.7■□□□□ 0.9
FOXF1Q12946 AC010997.5-201ENST00000609182 354 ntBASIC20.7■□□□□ 0.9
FOXF1Q12946 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.7■□□□□ 0.9
FOXF1Q12946 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXF1Q12946 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
FOXF1Q12946 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXF1Q12946 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXF1Q12946 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXF1Q12946 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXF1Q12946 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXF1Q12946 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.69■□□□□ 0.9
FOXF1Q12946 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.69■□□□□ 0.9
FOXF1Q12946 MIR6722-201ENST00000617286 78 ntBASIC20.69■□□□□ 0.9
FOXF1Q12946 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
FOXF1Q12946 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
FOXF1Q12946 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.68■□□□□ 0.9
FOXF1Q12946 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.68■□□□□ 0.9
FOXF1Q12946 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.68■□□□□ 0.9
FOXF1Q12946 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
FOXF1Q12946 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.68■□□□□ 0.9
FOXF1Q12946 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXF1Q12946 KRT16P3-201ENST00000439127 1283 ntBASIC20.68■□□□□ 0.9
FOXF1Q12946 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.68■□□□□ 0.9
FOXF1Q12946 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.68■□□□□ 0.9
FOXF1Q12946 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
FOXF1Q12946 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.67■□□□□ 0.9
FOXF1Q12946 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXF1Q12946 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
FOXF1Q12946 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.67■□□□□ 0.9
FOXF1Q12946 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
FOXF1Q12946 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXF1Q12946 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXF1Q12946 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.67■□□□□ 0.9
FOXF1Q12946 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.67■□□□□ 0.9
FOXF1Q12946 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
FOXF1Q12946 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
FOXF1Q12946 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.67■□□□□ 0.9
FOXF1Q12946 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms