Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.12■□□□□ 0.33
FOXA3P55318 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA3P55318 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
FOXA3P55318 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 AC092068.2-201ENST00000590491 1708 ntBASIC17.11■□□□□ 0.33
FOXA3P55318 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 CHST11-202ENST00000546689 756 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA3P55318 MED25-210ENST00000612854 801 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXA3P55318 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 MED25-214ENST00000622402 642 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXA3P55318 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
FOXA3P55318 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXA3P55318 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA3P55318 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA3P55318 ANOS2P-203ENST00000472227 1816 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L13-201ENST00000554103 1267 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L15-201ENST00000611059 1267 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L23-201ENST00000615195 1269 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L24-201ENST00000617576 1269 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L22-201ENST00000618238 1269 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L20-201ENST00000619712 1269 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L21-201ENST00000622058 1269 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L10-201ENST00000622460 1267 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 DUX4L25-201ENST00000624915 1269 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA3P55318 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.1■□□□□ 0.33
FOXA3P55318 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA3P55318 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA3P55318 ECEL1P1-201ENST00000373592 1742 ntBASIC17.1■□□□□ 0.33
FOXA3P55318 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA3P55318 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA3P55318 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
FOXA3P55318 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA3P55318 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA3P55318 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
FOXA3P55318 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA3P55318 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA3P55318 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.09■□□□□ 0.33
FOXA3P55318 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA3P55318 AL162393.1-201ENST00000437852 946 ntBASIC17.09■□□□□ 0.33
FOXA3P55318 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA3P55318 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
FOXA3P55318 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.08■□□□□ 0.33
FOXA3P55318 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA3P55318 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA3P55318 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA3P55318 AC007375.3-201ENST00000600936 2314 ntBASIC17.08■□□□□ 0.32
FOXA3P55318 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA3P55318 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.08■□□□□ 0.32
FOXA3P55318 C1orf229-201ENST00000623686 2258 ntBASIC17.08■□□□□ 0.32
FOXA3P55318 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
FOXA3P55318 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA3P55318 GUSBP5-202ENST00000510805 1989 ntBASIC17.08■□□□□ 0.32
FOXA3P55318 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA3P55318 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.07■□□□□ 0.32
FOXA3P55318 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA3P55318 AC126177.7-201ENST00000547904 679 ntBASIC17.07■□□□□ 0.32
FOXA3P55318 LINC01971-201ENST00000617888 1048 ntBASIC17.07■□□□□ 0.32
FOXA3P55318 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.07■□□□□ 0.32
FOXA3P55318 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.07■□□□□ 0.32
FOXA3P55318 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA3P55318 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
FOXA3P55318 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA3P55318 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
FOXA3P55318 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA3P55318 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.06■□□□□ 0.32
FOXA3P55318 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA3P55318 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
FOXA3P55318 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA3P55318 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.06■□□□□ 0.32
FOXA3P55318 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA3P55318 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA3P55318 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.06■□□□□ 0.32
FOXA3P55318 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA3P55318 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.06■□□□□ 0.32
FOXA3P55318 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.06■□□□□ 0.32
FOXA3P55318 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
FOXA3P55318 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
FOXA3P55318 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
FOXA3P55318 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA3P55318 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA3P55318 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms