Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.92■□□□□ 0.94
RFC3P40938 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RFC3P40938 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
RFC3P40938 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.92■□□□□ 0.94
RFC3P40938 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.92■□□□□ 0.94
RFC3P40938 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFC3P40938 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFC3P40938 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFC3P40938 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFC3P40938 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RFC3P40938 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFC3P40938 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFC3P40938 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFC3P40938 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RFC3P40938 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RFC3P40938 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.91■□□□□ 0.94
RFC3P40938 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.91■□□□□ 0.94
RFC3P40938 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.91■□□□□ 0.94
RFC3P40938 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.91■□□□□ 0.94
RFC3P40938 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.91■□□□□ 0.94
RFC3P40938 AC005703.6-201ENST00000623265 1329 ntBASIC20.91■□□□□ 0.94
RFC3P40938 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
RFC3P40938 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RFC3P40938 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFC3P40938 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFC3P40938 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFC3P40938 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFC3P40938 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFC3P40938 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RFC3P40938 AC022211.4-201ENST00000625094 2161 ntBASIC20.9■□□□□ 0.94
RFC3P40938 HLA-L-211ENST00000482052 1765 ntBASIC20.9■□□□□ 0.94
RFC3P40938 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RFC3P40938 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RFC3P40938 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RFC3P40938 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RFC3P40938 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RFC3P40938 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.89■□□□□ 0.94
RFC3P40938 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RFC3P40938 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RFC3P40938 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.89■□□□□ 0.93
RFC3P40938 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.89■□□□□ 0.93
RFC3P40938 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.93
RFC3P40938 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RFC3P40938 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RFC3P40938 AL022069.1-201ENST00000568025 1636 ntBASIC20.89■□□□□ 0.93
RFC3P40938 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
RFC3P40938 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
RFC3P40938 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFC3P40938 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFC3P40938 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFC3P40938 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.88■□□□□ 0.93
RFC3P40938 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RFC3P40938 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.88■□□□□ 0.93
RFC3P40938 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.88■□□□□ 0.93
RFC3P40938 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFC3P40938 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFC3P40938 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.88■□□□□ 0.93
RFC3P40938 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RFC3P40938 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.87■□□□□ 0.93
RFC3P40938 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFC3P40938 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
RFC3P40938 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFC3P40938 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFC3P40938 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.87■□□□□ 0.93
RFC3P40938 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RFC3P40938 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
RFC3P40938 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.87■□□□□ 0.93
RFC3P40938 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFC3P40938 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFC3P40938 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.86■□□□□ 0.93
RFC3P40938 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFC3P40938 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.86■□□□□ 0.93
RFC3P40938 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFC3P40938 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFC3P40938 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RFC3P40938 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.85■□□□□ 0.93
RFC3P40938 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RFC3P40938 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFC3P40938 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.85■□□□□ 0.93
RFC3P40938 SRD5A1P1-201ENST00000442297 786 ntBASIC20.85■□□□□ 0.93
RFC3P40938 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.85■□□□□ 0.93
RFC3P40938 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RFC3P40938 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
RFC3P40938 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.85■□□□□ 0.93
RFC3P40938 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RFC3P40938 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFC3P40938 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
RFC3P40938 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFC3P40938 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
RFC3P40938 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFC3P40938 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFC3P40938 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.84■□□□□ 0.93
RFC3P40938 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.84■□□□□ 0.93
RFC3P40938 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
RFC3P40938 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.84■□□□□ 0.93
RFC3P40938 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFC3P40938 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFC3P40938 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFC3P40938 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFC3P40938 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms