Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ATF4P18848 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATF4P18848 FOXO3B-201ENST00000395675 1928 ntBASIC18.94■□□□□ 0.62
ATF4P18848 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.94■□□□□ 0.62
ATF4P18848 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ATF4P18848 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
ATF4P18848 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.94■□□□□ 0.62
ATF4P18848 MIR4449-201ENST00000578365 66 ntBASIC18.94■□□□□ 0.62
ATF4P18848 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
ATF4P18848 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATF4P18848 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
ATF4P18848 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ATF4P18848 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.93■□□□□ 0.62
ATF4P18848 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.93■□□□□ 0.62
ATF4P18848 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
ATF4P18848 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.93■□□□□ 0.62
ATF4P18848 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.93■□□□□ 0.62
ATF4P18848 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATF4P18848 AP004609.3-201ENST00000610705 1884 ntBASIC18.93■□□□□ 0.62
ATF4P18848 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATF4P18848 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC18.93■□□□□ 0.62
ATF4P18848 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ATF4P18848 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ATF4P18848 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
ATF4P18848 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ATF4P18848 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
ATF4P18848 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.92■□□□□ 0.62
ATF4P18848 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
ATF4P18848 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.92■□□□□ 0.62
ATF4P18848 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ATF4P18848 AC096887.2-201ENST00000623443 1957 ntBASIC18.92■□□□□ 0.62
ATF4P18848 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATF4P18848 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATF4P18848 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATF4P18848 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
ATF4P18848 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.91■□□□□ 0.62
ATF4P18848 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATF4P18848 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.91■□□□□ 0.62
ATF4P18848 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATF4P18848 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ATF4P18848 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.91■□□□□ 0.62
ATF4P18848 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ATF4P18848 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATF4P18848 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATF4P18848 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.9■□□□□ 0.62
ATF4P18848 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.9■□□□□ 0.62
ATF4P18848 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATF4P18848 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.9■□□□□ 0.62
ATF4P18848 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ATF4P18848 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
ATF4P18848 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC18.9■□□□□ 0.62
ATF4P18848 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
ATF4P18848 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
ATF4P18848 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
ATF4P18848 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ATF4P18848 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
ATF4P18848 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATF4P18848 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.89■□□□□ 0.61
ATF4P18848 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.89■□□□□ 0.61
ATF4P18848 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC18.89■□□□□ 0.61
ATF4P18848 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ATF4P18848 MIR3648-2-201ENST00000581792 180 ntBASIC18.89■□□□□ 0.61
ATF4P18848 MIR3648-1-201ENST00000615959 180 ntBASIC18.89■□□□□ 0.61
ATF4P18848 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ATF4P18848 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATF4P18848 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.89■□□□□ 0.61
ATF4P18848 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATF4P18848 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ATF4P18848 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.89■□□□□ 0.61
ATF4P18848 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ATF4P18848 AC127496.7-201ENST00000625110 1798 ntBASIC18.88■□□□□ 0.61
ATF4P18848 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.88■□□□□ 0.61
ATF4P18848 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATF4P18848 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
ATF4P18848 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
ATF4P18848 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ATF4P18848 DUX4L11-201ENST00000611504 1267 ntBASIC18.88■□□□□ 0.61
ATF4P18848 DUX4L12-201ENST00000614593 1267 ntBASIC18.88■□□□□ 0.61
ATF4P18848 DUX4L14-201ENST00000621227 1267 ntBASIC18.88■□□□□ 0.61
ATF4P18848 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATF4P18848 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
ATF4P18848 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ATF4P18848 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATF4P18848 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATF4P18848 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATF4P18848 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ATF4P18848 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ATF4P18848 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.86■□□□□ 0.61
ATF4P18848 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ATF4P18848 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ATF4P18848 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.86■□□□□ 0.61
ATF4P18848 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ATF4P18848 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms