Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
PGK1P00558 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
PGK1P00558 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PGK1P00558 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.71■■□□□ 1.71
PGK1P00558 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.71■■□□□ 1.71
PGK1P00558 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
PGK1P00558 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.71■■□□□ 1.71
PGK1P00558 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.71■■□□□ 1.71
PGK1P00558 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
PGK1P00558 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
PGK1P00558 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
PGK1P00558 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
PGK1P00558 AC092803.2-201ENST00000564287 1899 ntBASIC25.7■■□□□ 1.71
PGK1P00558 C17orf82-201ENST00000623772 1530 ntBASIC25.7■■□□□ 1.7
PGK1P00558 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
PGK1P00558 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.7■■□□□ 1.7
PGK1P00558 AC006455.2-201ENST00000429931 906 ntBASIC25.7■■□□□ 1.7
PGK1P00558 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
PGK1P00558 SLC6A10P-202ENST00000431994 2058 ntBASIC25.7■■□□□ 1.7
PGK1P00558 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PGK1P00558 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PGK1P00558 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.69■■□□□ 1.7
PGK1P00558 AC136469.2-201ENST00000623944 1028 ntBASIC25.69■■□□□ 1.7
PGK1P00558 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
PGK1P00558 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PGK1P00558 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PGK1P00558 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
PGK1P00558 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
PGK1P00558 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PGK1P00558 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.67■■□□□ 1.7
PGK1P00558 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
PGK1P00558 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
PGK1P00558 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.67■■□□□ 1.7
PGK1P00558 AC241377.3-202ENST00000626088 1088 ntBASIC25.67■■□□□ 1.7
PGK1P00558 AC241585.3-202ENST00000628937 1088 ntBASIC25.67■■□□□ 1.7
PGK1P00558 AC245100.8-202ENST00000629247 1058 ntBASIC25.67■■□□□ 1.7
PGK1P00558 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PGK1P00558 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PGK1P00558 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.66■■□□□ 1.7
PGK1P00558 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.66■■□□□ 1.7
PGK1P00558 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.66■■□□□ 1.7
PGK1P00558 SP2-202ENST00000613139 908 ntTSL 5 BASIC25.66■■□□□ 1.7
PGK1P00558 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PGK1P00558 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PGK1P00558 AL022069.1-201ENST00000568025 1636 ntBASIC25.66■■□□□ 1.7
PGK1P00558 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PGK1P00558 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
PGK1P00558 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PGK1P00558 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PGK1P00558 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PGK1P00558 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
PGK1P00558 AC233992.3-201ENST00000607491 485 ntBASIC25.65■■□□□ 1.7
PGK1P00558 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
PGK1P00558 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
PGK1P00558 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
PGK1P00558 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
PGK1P00558 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PGK1P00558 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
PGK1P00558 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
PGK1P00558 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
PGK1P00558 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PGK1P00558 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.63■■□□□ 1.69
PGK1P00558 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
PGK1P00558 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.63■■□□□ 1.69
PGK1P00558 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
PGK1P00558 MIR3181-201ENST00000578512 73 ntBASIC25.63■■□□□ 1.69
PGK1P00558 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.63■■□□□ 1.69
PGK1P00558 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.63■■□□□ 1.69
PGK1P00558 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
PGK1P00558 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
PGK1P00558 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.63■■□□□ 1.69
PGK1P00558 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PGK1P00558 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
PGK1P00558 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PGK1P00558 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PGK1P00558 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PGK1P00558 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.62■■□□□ 1.69
PGK1P00558 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.62■■□□□ 1.69
PGK1P00558 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PGK1P00558 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.62■■□□□ 1.69
PGK1P00558 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.62■■□□□ 1.69
PGK1P00558 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PGK1P00558 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PGK1P00558 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
PGK1P00558 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
PGK1P00558 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PGK1P00558 AC009086.3-201ENST00000623486 1008 ntBASIC25.61■■□□□ 1.69
PGK1P00558 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PGK1P00558 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.61■■□□□ 1.69
PGK1P00558 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
PGK1P00558 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PGK1P00558 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PGK1P00558 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PGK1P00558 BX842568.3-201ENST00000418104 571 ntBASIC25.6■■□□□ 1.69
PGK1P00558 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PGK1P00558 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.6■■□□□ 1.69
PGK1P00558 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC25.6■■□□□ 1.69
PGK1P00558 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.6■■□□□ 1.69
PGK1P00558 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.6■■□□□ 1.69
PGK1P00558 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms