Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.87■■□□□ 1.73
MSH4O15457 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.87■■□□□ 1.73
MSH4O15457 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
MSH4O15457 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH4O15457 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
MSH4O15457 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH4O15457 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH4O15457 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MSH4O15457 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH4O15457 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
MSH4O15457 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
MSH4O15457 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
MSH4O15457 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.86■■□□□ 1.73
MSH4O15457 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MSH4O15457 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.86■■□□□ 1.73
MSH4O15457 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.86■■□□□ 1.73
MSH4O15457 MIR3621-201ENST00000580529 85 ntBASIC25.86■■□□□ 1.73
MSH4O15457 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MSH4O15457 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.86■■□□□ 1.73
MSH4O15457 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.86■■□□□ 1.73
MSH4O15457 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
MSH4O15457 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.85■■□□□ 1.73
MSH4O15457 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
MSH4O15457 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC25.84■■□□□ 1.73
MSH4O15457 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.84■■□□□ 1.73
MSH4O15457 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.84■■□□□ 1.73
MSH4O15457 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.84■■□□□ 1.73
MSH4O15457 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 AC141586.4-201ENST00000624558 1573 ntBASIC25.84■■□□□ 1.73
MSH4O15457 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
MSH4O15457 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.83■■□□□ 1.73
MSH4O15457 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.83■■□□□ 1.73
MSH4O15457 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
MSH4O15457 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.83■■□□□ 1.73
MSH4O15457 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.83■■□□□ 1.73
MSH4O15457 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
MSH4O15457 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.83■■□□□ 1.73
MSH4O15457 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
MSH4O15457 AC005703.6-201ENST00000623265 1329 ntBASIC25.83■■□□□ 1.73
MSH4O15457 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.83■■□□□ 1.72
MSH4O15457 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
MSH4O15457 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
MSH4O15457 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
MSH4O15457 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
MSH4O15457 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.82■■□□□ 1.72
MSH4O15457 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
MSH4O15457 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
MSH4O15457 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
MSH4O15457 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
MSH4O15457 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.81■■□□□ 1.72
MSH4O15457 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.81■■□□□ 1.72
MSH4O15457 AL356740.2-201ENST00000601559 647 ntBASIC25.81■■□□□ 1.72
MSH4O15457 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
MSH4O15457 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
MSH4O15457 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
MSH4O15457 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH4O15457 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH4O15457 ALDH1A3-203ENST00000557963 1670 ntBASIC25.8■■□□□ 1.72
MSH4O15457 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH4O15457 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.8■■□□□ 1.72
MSH4O15457 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.8■■□□□ 1.72
MSH4O15457 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH4O15457 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH4O15457 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.8■■□□□ 1.72
MSH4O15457 AC004812.2-201ENST00000611079 2094 ntBASIC25.79■■□□□ 1.72
MSH4O15457 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
MSH4O15457 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
MSH4O15457 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH4O15457 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH4O15457 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.79■■□□□ 1.72
MSH4O15457 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.79■■□□□ 1.72
MSH4O15457 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.79■■□□□ 1.72
MSH4O15457 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH4O15457 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH4O15457 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
MSH4O15457 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.78■■□□□ 1.72
MSH4O15457 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.78■■□□□ 1.72
MSH4O15457 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
MSH4O15457 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
MSH4O15457 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH4O15457 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.77■■□□□ 1.72
MSH4O15457 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.77■■□□□ 1.72
MSH4O15457 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH4O15457 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH4O15457 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.77■■□□□ 1.72
MSH4O15457 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.77■■□□□ 1.72
MSH4O15457 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC25.77■■□□□ 1.72
MSH4O15457 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH4O15457 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH4O15457 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.77■■□□□ 1.72
MSH4O15457 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.72
MSH4O15457 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.76■■□□□ 1.71
MSH4O15457 AC131281.2-201ENST00000520478 145 ntBASIC25.76■■□□□ 1.71
MSH4O15457 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms