Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC40.36■■■■■ 4.05
CCDC88BA6NC98 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC40.35■■■■■ 4.05
CCDC88BA6NC98 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC40.35■■■■■ 4.05
CCDC88BA6NC98 RHOF-204ENST00000537265 699 ntTSL 2 BASIC40.34■■■■■ 4.05
CCDC88BA6NC98 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC40.34■■■■■ 4.05
CCDC88BA6NC98 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC40.34■■■■■ 4.05
CCDC88BA6NC98 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC40.33■■■■■ 4.05
CCDC88BA6NC98 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC40.33■■■■■ 4.05
CCDC88BA6NC98 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC40.33■■■■■ 4.05
CCDC88BA6NC98 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC40.33■■■■■ 4.05
CCDC88BA6NC98 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC40.33■■■■■ 4.05
CCDC88BA6NC98 AC008764.7-201ENST00000593779 1081 ntBASIC40.33■■■■■ 4.05
CCDC88BA6NC98 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC40.33■■■■■ 4.05
CCDC88BA6NC98 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC40.32■■■■■ 4.05
CCDC88BA6NC98 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC40.32■■■■■ 4.04
CCDC88BA6NC98 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC40.32■■■■■ 4.04
CCDC88BA6NC98 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC40.31■■■■■ 4.04
CCDC88BA6NC98 JTB-203ENST00000368589 1216 ntTSL 2 BASIC40.31■■■■■ 4.04
CCDC88BA6NC98 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC40.31■■■■■ 4.04
CCDC88BA6NC98 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC40.3■■■■■ 4.04
CCDC88BA6NC98 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC40.3■■■■■ 4.04
CCDC88BA6NC98 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC40.3■■■■■ 4.04
CCDC88BA6NC98 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC40.29■■■■■ 4.04
CCDC88BA6NC98 PARL-206ENST00000435888 1098 ntTSL 5 BASIC40.29■■■■■ 4.04
CCDC88BA6NC98 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC40.29■■■■■ 4.04
CCDC88BA6NC98 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC40.29■■■■■ 4.04
CCDC88BA6NC98 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC40.29■■■■■ 4.04
CCDC88BA6NC98 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC40.28■■■■■ 4.04
CCDC88BA6NC98 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC40.28■■■■■ 4.04
CCDC88BA6NC98 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC40.28■■■■■ 4.04
CCDC88BA6NC98 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC40.28■■■■■ 4.04
CCDC88BA6NC98 IRS3P-201ENST00000223076 1006 ntBASIC40.27■■■■■ 4.04
CCDC88BA6NC98 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC40.27■■■■■ 4.04
CCDC88BA6NC98 HES6-206ENST00000409574 738 ntTSL 2 BASIC40.27■■■■■ 4.04
CCDC88BA6NC98 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC40.27■■■■■ 4.04
CCDC88BA6NC98 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC40.27■■■■■ 4.04
CCDC88BA6NC98 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC40.27■■■■■ 4.04
CCDC88BA6NC98 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
CCDC88BA6NC98 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.04
CCDC88BA6NC98 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC40.26■■■■■ 4.04
CCDC88BA6NC98 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC40.26■■■■■ 4.04
CCDC88BA6NC98 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC40.26■■■■■ 4.03
CCDC88BA6NC98 AL121749.1-202ENST00000609313 2153 ntBASIC40.25■■■■■ 4.03
CCDC88BA6NC98 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC40.25■■■■■ 4.03
CCDC88BA6NC98 SNX3-202ENST00000349379 890 ntTSL 2 BASIC40.25■■■■■ 4.03
CCDC88BA6NC98 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC40.25■■■■■ 4.03
CCDC88BA6NC98 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC40.25■■■■■ 4.03
CCDC88BA6NC98 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC40.25■■■■■ 4.03
CCDC88BA6NC98 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC40.24■■■■■ 4.03
CCDC88BA6NC98 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC40.24■■■■■ 4.03
CCDC88BA6NC98 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC40.24■■■■■ 4.03
CCDC88BA6NC98 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC40.24■■■■■ 4.03
CCDC88BA6NC98 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC40.23■■■■■ 4.03
CCDC88BA6NC98 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC40.23■■■■■ 4.03
CCDC88BA6NC98 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC40.23■■■■■ 4.03
CCDC88BA6NC98 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC40.23■■■■■ 4.03
CCDC88BA6NC98 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC40.22■■■■■ 4.03
CCDC88BA6NC98 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC40.22■■■■■ 4.03
CCDC88BA6NC98 AC241377.3-202ENST00000626088 1088 ntBASIC40.22■■■■■ 4.03
CCDC88BA6NC98 AC241585.3-202ENST00000628937 1088 ntBASIC40.22■■■■■ 4.03
CCDC88BA6NC98 AC245100.8-202ENST00000629247 1058 ntBASIC40.22■■■■■ 4.03
CCDC88BA6NC98 AL022069.1-201ENST00000568025 1636 ntBASIC40.22■■■■■ 4.03
CCDC88BA6NC98 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC40.22■■■■■ 4.03
CCDC88BA6NC98 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC40.22■■■■■ 4.03
CCDC88BA6NC98 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC40.22■■■■■ 4.03
CCDC88BA6NC98 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC40.2■■■■■ 4.03
CCDC88BA6NC98 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC40.19■■■■■ 4.02
CCDC88BA6NC98 CD37-213ENST00000598095 1598 ntTSL 2 BASIC40.19■■■■■ 4.02
CCDC88BA6NC98 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC40.19■■■■■ 4.02
CCDC88BA6NC98 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC40.19■■■■■ 4.02
CCDC88BA6NC98 MIR3181-201ENST00000578512 73 ntBASIC40.19■■■■■ 4.02
CCDC88BA6NC98 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC40.18■■■■■ 4.02
CCDC88BA6NC98 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC40.18■■■■■ 4.02
CCDC88BA6NC98 LSR-205ENST00000427250 1606 ntTSL 2 BASIC40.18■■■■■ 4.02
CCDC88BA6NC98 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC40.18■■■■■ 4.02
CCDC88BA6NC98 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC40.18■■■■■ 4.02
CCDC88BA6NC98 DUSP8P4-201ENST00000399538 1761 ntBASIC40.17■■■■■ 4.02
CCDC88BA6NC98 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC40.17■■■■■ 4.02
CCDC88BA6NC98 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC40.17■■■■■ 4.02
CCDC88BA6NC98 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC40.17■■■■■ 4.02
CCDC88BA6NC98 BX842568.3-201ENST00000418104 571 ntBASIC40.16■■■■■ 4.02
CCDC88BA6NC98 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC40.16■■■■■ 4.02
CCDC88BA6NC98 MPST-208ENST00000628507 698 ntTSL 5 BASIC40.16■■■■■ 4.02
CCDC88BA6NC98 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC40.16■■■■■ 4.02
CCDC88BA6NC98 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC40.16■■■■■ 4.02
CCDC88BA6NC98 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC40.16■■■■■ 4.02
CCDC88BA6NC98 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC40.15■■■■■ 4.02
CCDC88BA6NC98 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC40.15■■■■■ 4.02
CCDC88BA6NC98 AC233992.3-201ENST00000607491 485 ntBASIC40.15■■■■■ 4.02
CCDC88BA6NC98 NKILA-201ENST00000613231 537 ntTSL 4 BASIC40.15■■■■■ 4.02
CCDC88BA6NC98 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC40.15■■■■■ 4.02
CCDC88BA6NC98 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC40.15■■■■■ 4.02
CCDC88BA6NC98 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC40.15■■■■■ 4.02
CCDC88BA6NC98 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC40.14■■■■■ 4.02
CCDC88BA6NC98 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC40.14■■■■■ 4.02
CCDC88BA6NC98 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
CCDC88BA6NC98 HACD1-201ENST00000326961 773 ntTSL 2 BASIC40.13■■■■■ 4.02
CCDC88BA6NC98 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC40.13■■■■■ 4.02
CCDC88BA6NC98 SP2-202ENST00000613139 908 ntTSL 5 BASIC40.13■■■■■ 4.02
CCDC88BA6NC98 AC009086.3-201ENST00000623486 1008 ntBASIC40.13■■■■■ 4.02
Retrieved 100 of 98,524 protein–RNA pairs in 9.4 ms