Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AC022748.3-201ENST00000621828 275 ntBASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 CICP23-201ENST00000605013 2741 ntBASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 DNAJC24-202ENST00000465995 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 FNTAP2-201ENST00000430308 634 ntBASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 AL358472.3-201ENST00000608147 415 ntBASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAIPQ9BWF2 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAIPQ9BWF2 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.33■□□□□ 0.21
TRAIPQ9BWF2 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.33■□□□□ 0.21
TRAIPQ9BWF2 AC007292.2-201ENST00000593524 1812 ntBASIC16.33■□□□□ 0.21
TRAIPQ9BWF2 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
TRAIPQ9BWF2 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAIPQ9BWF2 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms