Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.4□□□□□ -0.1
VMP1Q96GC9 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 AC015936.2-201ENST00000593177 259 ntBASIC14.4□□□□□ -0.1
VMP1Q96GC9 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VMP1Q96GC9 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VMP1Q96GC9 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.4□□□□□ -0.11
VMP1Q96GC9 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 AC107918.4-201ENST00000641966 3141 ntBASIC14.39□□□□□ -0.11
VMP1Q96GC9 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 GAPDHP40-201ENST00000505218 1006 ntBASIC14.39□□□□□ -0.11
VMP1Q96GC9 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VMP1Q96GC9 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VMP1Q96GC9 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VMP1Q96GC9 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.38□□□□□ -0.11
VMP1Q96GC9 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms