Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AL158070.2-201ENST00000623713 1621 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 TUBB1P2-201ENST00000422712 1306 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 TUBB1P1-201ENST00000503144 1300 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 RPL5P21-201ENST00000404620 815 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 RNA5SP486-201ENST00000515961 83 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AC078819.1-201ENST00000547454 765 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AC012085.1-201ENST00000548270 765 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 PTENP1-202ENST00000532280 3996 ntBASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.53□□□□□ -0.08
CLIP3Q96DZ5 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.52□□□□□ -0.08
CLIP3Q96DZ5 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 TPM3P8-201ENST00000330554 643 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AL645937.2-201ENST00000396808 931 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 ACTBP11-201ENST00000436287 1126 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 SAMD11P1-201ENST00000571429 661 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AC009542.2-202ENST00000619004 1067 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AC008687.7-202ENST00000637404 953 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms