Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SHROOM3Q8TF72 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AC005089.1-201ENST00000619486 2241 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 HINT2P1-201ENST00000419438 481 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AL354877.1-201ENST00000424412 413 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 KLF2P4-201ENST00000451959 1225 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AC100850.1-201ENST00000506768 649 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AC132938.4-201ENST00000623835 848 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AC015688.4-201ENST00000580780 1647 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 TPM3P8-201ENST00000330554 643 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 HIST2H2BB-201ENST00000449108 381 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AC007551.1-201ENST00000457394 519 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AL136172.1-201ENST00000598590 1394 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 AL118558.3-201ENST00000607414 1079 ntBASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.15■□□□□ 0.02
SHROOM3Q8TF72 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 RN7SL48P-201ENST00000579283 293 ntBASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 AC132192.2-201ENST00000596206 1147 ntBASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 AC015967.2-201ENST00000624092 234 ntBASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 AC006435.4-201ENST00000625037 234 ntBASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 AL356737.1-201ENST00000634391 234 ntBASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms