Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 GPAA1P2-201ENST00000417923 928 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CICP11-201ENST00000434745 2827 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AP006547.1-201ENST00000563435 692 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC007950.2-201ENST00000615045 2347 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 C2orf27AP3-201ENST00000434123 579 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 FGFR3P5-201ENST00000564496 886 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AL354718.3-201ENST00000616414 581 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CR382287.1-201ENST00000623954 586 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 KCTD7-209ENST00000640385 4118 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PAX9-202ENST00000402703 3104 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AL591846.1-201ENST00000451736 433 ntBASIC4.67□□□□□ -1.66
SYNE1Q8NF91 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 BDNF-218ENST00000533246 4000 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SYNE1Q8NF91 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL096828.3-201ENST00000615354 462 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 EPB41L4A-201ENST00000261486 4707 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms