Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 AL590440.2-201ENST00000641973 1595 ntBASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC60Q8IWA6 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 TUBBP5-203ENST00000508529 1334 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 CYP46A4P-201ENST00000414953 267 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 SPTLC1P5-201ENST00000450718 252 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 HLA-J-204ENST00000495278 958 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 MARK2P5-201ENST00000507649 634 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 AL160314.3-201ENST00000556041 767 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 AC026740.1-201ENST00000607068 791 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 AP002414.2-201ENST00000591780 3365 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 AC136759.1-202ENST00000530858 2194 ntBASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC60Q8IWA6 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 DBET-201ENST00000630918 3363 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 AC103702.1-201ENST00000548801 2630 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 AL035414.1-201ENST00000451327 857 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 SCARNA21-201ENST00000517026 139 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 SNORD3B-2-202ENST00000571722 791 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 AC008805.1-201ENST00000590892 364 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 AL021578.1-201ENST00000613646 709 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.47■□□□□ 0.23
CCDC60Q8IWA6 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms