Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AC055811.3-201ENST00000584952 686 ntBASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AC004686.1-201ENST00000605113 538 ntBASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC88AQ3V6T2 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 AC008741.2-201ENST00000612792 3115 ntBASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 LINC01101-201ENST00000622953 1884 ntBASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 AC073347.1-201ENST00000421633 2643 ntBASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC88AQ3V6T2 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 AC026470.1-201ENST00000478038 846 ntBASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 ALG1L3P-201ENST00000503331 765 ntBASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 API5-208ENST00000531273 1868 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 AC007292.2-201ENST00000593524 1812 ntBASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 ZNF436-AS1-201ENST00000335648 2547 ntBASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms