Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.13□□□□□ -0.47
LMO4P61968 KRT18P36-201ENST00000411618 1276 ntBASIC12.13□□□□□ -0.47
LMO4P61968 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC12.13□□□□□ -0.47
LMO4P61968 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 PARP8-218ENST00000513738 596 ntTSL 4 BASIC12.13□□□□□ -0.47
LMO4P61968 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC12.13□□□□□ -0.47
LMO4P61968 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC12.13□□□□□ -0.47
LMO4P61968 PRKXP1-201ENST00000561423 1122 ntBASIC12.13□□□□□ -0.47
LMO4P61968 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC12.13□□□□□ -0.47
LMO4P61968 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC12.13□□□□□ -0.47
LMO4P61968 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC12.13□□□□□ -0.47
LMO4P61968 CDK7-214ENST00000626796 358 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 RETN-203ENST00000629642 400 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC12.13□□□□□ -0.47
LMO4P61968 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.13□□□□□ -0.47
LMO4P61968 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
LMO4P61968 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 AC018629.1-201ENST00000623381 1736 ntBASIC12.12□□□□□ -0.47
LMO4P61968 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
LMO4P61968 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
LMO4P61968 NCR3-202ENST00000376071 541 ntTSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 UFM1-202ENST00000379649 846 ntTSL 4 BASIC12.12□□□□□ -0.47
LMO4P61968 LBH-202ENST00000401506 485 ntTSL 3 BASIC12.12□□□□□ -0.47
LMO4P61968 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC12.12□□□□□ -0.47
LMO4P61968 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 FTLP1-201ENST00000449155 526 ntBASIC12.12□□□□□ -0.47
LMO4P61968 CEP164P1-201ENST00000455142 418 ntBASIC12.12□□□□□ -0.47
LMO4P61968 PFN2-206ENST00000461930 606 ntTSL 4 BASIC12.12□□□□□ -0.47
LMO4P61968 TMEM198B-204ENST00000484016 896 ntBASIC12.12□□□□□ -0.47
LMO4P61968 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC12.12□□□□□ -0.47
LMO4P61968 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 AC003686.1-201ENST00000550956 1034 ntBASIC12.12□□□□□ -0.47
LMO4P61968 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC12.12□□□□□ -0.47
LMO4P61968 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC12.12□□□□□ -0.47
LMO4P61968 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 AC092299.1-201ENST00000632679 757 ntBASIC12.12□□□□□ -0.47
LMO4P61968 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.12□□□□□ -0.47
LMO4P61968 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
LMO4P61968 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
LMO4P61968 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms