Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HMGCS2P54868 BANF1P3-201ENST00000412556 261 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGCS2P54868 PFN2-202ENST00000423691 911 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGCS2P54868 NAGK-204ENST00000443872 878 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGCS2P54868 AC079112.1-201ENST00000454972 939 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 PGAM1P5-201ENST00000548011 764 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 AL031713.1-201ENST00000564813 661 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 AC005632.3-201ENST00000605544 308 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGCS2P54868 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HMGCS2P54868 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 CICP23-201ENST00000605013 2741 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGCS2P54868 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGCS2P54868 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 AL162727.3-201ENST00000635661 2787 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 KRT18P9-201ENST00000604826 1300 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HMGCS2P54868 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HMGCS2P54868 MIR557-201ENST00000385239 98 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HMGCS2P54868 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 AL355334.1-201ENST00000417713 215 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGCS2P54868 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGCS2P54868 OR2R1P-201ENST00000441404 914 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 RPL7P35-201ENST00000446943 740 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 NDUFS6P1-201ENST00000485187 316 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGCS2P54868 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
HMGCS2P54868 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC17.03■□□□□ 0.32
HMGCS2P54868 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
HMGCS2P54868 MIR4522-201ENST00000584932 87 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC17.03■□□□□ 0.32
HMGCS2P54868 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGCS2P54868 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC17.03■□□□□ 0.32
HMGCS2P54868 AP001065.2-201ENST00000617205 644 ntBASIC17.03■□□□□ 0.32
HMGCS2P54868 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGCS2P54868 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGCS2P54868 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGCS2P54868 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGCS2P54868 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
HMGCS2P54868 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGCS2P54868 KRT8P28-201ENST00000433288 1390 ntBASIC17.02■□□□□ 0.32
HMGCS2P54868 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGCS2P54868 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HMGCS2P54868 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGCS2P54868 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 AC068587.6-202ENST00000641839 5619 ntBASIC17.02■□□□□ 0.32
HMGCS2P54868 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 SOD2-202ENST00000367054 815 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGCS2P54868 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC17.02■□□□□ 0.32
HMGCS2P54868 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 RPSAP15-201ENST00000448168 861 ntBASIC17.02■□□□□ 0.32
HMGCS2P54868 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGCS2P54868 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGCS2P54868 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGCS2P54868 SIGLEC18P-201ENST00000602271 909 ntBASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms