Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
HOXA1P49639 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXA1P49639 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HOXA1P49639 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXA1P49639 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 AC130686.1-201ENST00000622936 2466 ntBASIC12.49□□□□□ -0.41
HOXA1P49639 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 AC004241.5-201ENST00000623870 2448 ntBASIC12.49□□□□□ -0.41
HOXA1P49639 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXA1P49639 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXA1P49639 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
HOXA1P49639 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 ACTG1P14-201ENST00000446382 1122 ntBASIC12.49□□□□□ -0.41
HOXA1P49639 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXA1P49639 COX5A-206ENST00000568783 571 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXA1P49639 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXA1P49639 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXA1P49639 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
HOXA1P49639 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXA1P49639 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXA1P49639 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 MAPT-IT1-201ENST00000624111 3016 ntBASIC12.48□□□□□ -0.41
HOXA1P49639 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXA1P49639 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXA1P49639 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXA1P49639 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms