Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.66□□□□□ -0.06
SHMT2P34897 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SHMT2P34897 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.66□□□□□ -0.06
SHMT2P34897 FAM197Y7-201ENST00000432892 766 ntBASIC14.66□□□□□ -0.06
SHMT2P34897 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.66□□□□□ -0.06
SHMT2P34897 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.66□□□□□ -0.06
SHMT2P34897 KRT223P-202ENST00000449164 1292 ntBASIC14.66□□□□□ -0.06
SHMT2P34897 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.66□□□□□ -0.06
SHMT2P34897 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.66□□□□□ -0.06
SHMT2P34897 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.66□□□□□ -0.06
SHMT2P34897 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SHMT2P34897 MIR6775-201ENST00000617557 69 ntBASIC14.66□□□□□ -0.06
SHMT2P34897 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SHMT2P34897 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SHMT2P34897 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.66□□□□□ -0.06
SHMT2P34897 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SHMT2P34897 AL137784.3-201ENST00000623858 2288 ntBASIC14.66□□□□□ -0.06
SHMT2P34897 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SHMT2P34897 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SHMT2P34897 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
SHMT2P34897 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.65□□□□□ -0.06
SHMT2P34897 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SHMT2P34897 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 ZBED1P1-201ENST00000502364 1930 ntBASIC14.65□□□□□ -0.06
SHMT2P34897 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 CD8B2-202ENST00000417670 633 ntBASIC14.65□□□□□ -0.06
SHMT2P34897 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.65□□□□□ -0.06
SHMT2P34897 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.65□□□□□ -0.06
SHMT2P34897 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.65□□□□□ -0.06
SHMT2P34897 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.65□□□□□ -0.06
SHMT2P34897 SNX29P1-201ENST00000548357 1007 ntBASIC14.65□□□□□ -0.06
SHMT2P34897 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.65□□□□□ -0.06
SHMT2P34897 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.65□□□□□ -0.06
SHMT2P34897 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SHMT2P34897 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.65□□□□□ -0.06
SHMT2P34897 COX11-210ENST00000639671 696 ntBASIC14.65□□□□□ -0.06
SHMT2P34897 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
SHMT2P34897 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 REXO1L2P-201ENST00000425429 2069 ntBASIC14.65□□□□□ -0.06
SHMT2P34897 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
SHMT2P34897 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.65□□□□□ -0.06
SHMT2P34897 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.65□□□□□ -0.06
SHMT2P34897 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SHMT2P34897 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.65□□□□□ -0.07
SHMT2P34897 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
SHMT2P34897 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.64□□□□□ -0.07
SHMT2P34897 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.64□□□□□ -0.07
SHMT2P34897 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.64□□□□□ -0.07
SHMT2P34897 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
SHMT2P34897 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.64□□□□□ -0.07
SHMT2P34897 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.64□□□□□ -0.07
SHMT2P34897 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.64□□□□□ -0.07
SHMT2P34897 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
SHMT2P34897 ANKRD19P-201ENST00000338192 862 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms