Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
BDNFP23560 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
BDNFP23560 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 PCDHA3-202ENST00000532566 4594 ntBASIC15.7■□□□□ 0.1
BDNFP23560 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.7■□□□□ 0.1
BDNFP23560 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
BDNFP23560 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
BDNFP23560 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.7■□□□□ 0.1
BDNFP23560 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.7■□□□□ 0.1
BDNFP23560 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
BDNFP23560 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.7■□□□□ 0.1
BDNFP23560 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.7■□□□□ 0.1
BDNFP23560 AC010141.1-201ENST00000411585 623 ntBASIC15.7■□□□□ 0.1
BDNFP23560 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.7■□□□□ 0.1
BDNFP23560 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.7■□□□□ 0.1
BDNFP23560 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
BDNFP23560 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.7■□□□□ 0.1
BDNFP23560 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
BDNFP23560 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
BDNFP23560 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.7■□□□□ 0.1
BDNFP23560 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
BDNFP23560 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.7■□□□□ 0.1
BDNFP23560 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
BDNFP23560 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.7■□□□□ 0.1
BDNFP23560 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.69■□□□□ 0.1
BDNFP23560 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.69■□□□□ 0.1
BDNFP23560 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
BDNFP23560 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.69■□□□□ 0.1
BDNFP23560 AC004898.1-201ENST00000451057 766 ntBASIC15.69■□□□□ 0.1
BDNFP23560 KRT8P13-201ENST00000463294 1010 ntBASIC15.69■□□□□ 0.1
BDNFP23560 AC021723.1-201ENST00000486306 515 ntBASIC15.69■□□□□ 0.1
BDNFP23560 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.69■□□□□ 0.1
BDNFP23560 DUX4L46-201ENST00000566845 751 ntBASIC15.69■□□□□ 0.1
BDNFP23560 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.69■□□□□ 0.1
BDNFP23560 BX088702.1-201ENST00000610784 235 ntBASIC15.69■□□□□ 0.1
BDNFP23560 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
BDNFP23560 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.69■□□□□ 0.1
BDNFP23560 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
BDNFP23560 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.69■□□□□ 0.1
BDNFP23560 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
BDNFP23560 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.69■□□□□ 0.1
BDNFP23560 AC018529.2-202ENST00000611482 3087 ntBASIC15.69■□□□□ 0.1
BDNFP23560 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms