Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 AL138725.1-201ENST00000407347 1314 ntBASIC14.22□□□□□ -0.13
SDC1P18827 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SDC1P18827 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
SDC1P18827 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
SDC1P18827 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.22□□□□□ -0.13
SDC1P18827 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.22□□□□□ -0.13
SDC1P18827 FAM207CP-201ENST00000443486 507 ntBASIC14.22□□□□□ -0.13
SDC1P18827 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.22□□□□□ -0.13
SDC1P18827 FO681548.1-201ENST00000455617 1132 ntBASIC14.22□□□□□ -0.13
SDC1P18827 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.22□□□□□ -0.13
SDC1P18827 AC131206.1-201ENST00000538078 1211 ntBASIC14.22□□□□□ -0.13
SDC1P18827 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.22□□□□□ -0.13
SDC1P18827 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.22□□□□□ -0.13
SDC1P18827 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.22□□□□□ -0.13
SDC1P18827 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.22□□□□□ -0.13
SDC1P18827 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.22□□□□□ -0.13
SDC1P18827 AC008494.3-201ENST00000606615 944 ntBASIC14.22□□□□□ -0.13
SDC1P18827 WFDC1-204ENST00000613603 549 ntBASIC14.22□□□□□ -0.13
SDC1P18827 CU634019.7-201ENST00000624153 1185 ntBASIC14.22□□□□□ -0.13
SDC1P18827 FP236241.2-201ENST00000624906 1185 ntBASIC14.22□□□□□ -0.13
SDC1P18827 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 AC090505.1-201ENST00000430515 1834 ntBASIC14.22□□□□□ -0.13
SDC1P18827 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.22□□□□□ -0.13
SDC1P18827 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SDC1P18827 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.21□□□□□ -0.13
SDC1P18827 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.21□□□□□ -0.13
SDC1P18827 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SDC1P18827 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
SDC1P18827 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.21□□□□□ -0.13
SDC1P18827 AL162726.2-201ENST00000438986 1017 ntBASIC14.21□□□□□ -0.13
SDC1P18827 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 AC022137.2-201ENST00000503482 481 ntBASIC14.21□□□□□ -0.13
SDC1P18827 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 WASH4P-201ENST00000564273 1246 ntBASIC14.21□□□□□ -0.13
SDC1P18827 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.21□□□□□ -0.13
SDC1P18827 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.21□□□□□ -0.13
SDC1P18827 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 AC016397.2-201ENST00000624848 1985 ntBASIC14.21□□□□□ -0.13
SDC1P18827 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
SDC1P18827 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SDC1P18827 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.21□□□□□ -0.13
SDC1P18827 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SDC1P18827 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
SDC1P18827 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SDC1P18827 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.21□□□□□ -0.14
SDC1P18827 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SDC1P18827 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SDC1P18827 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms