Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
CXCL1P09341 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 MALL-201ENST00000272462 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 RHPN1-AS1-201ENST00000518049 1918 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 POM121L14P-201ENST00000406100 1558 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 AC012531.1-201ENST00000562848 2680 ntBASIC11.62□□□□□ -0.55
CXCL1P09341 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CXCL1P09341 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC11.62□□□□□ -0.55
CXCL1P09341 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 AC125807.2-201ENST00000513358 3514 ntBASIC11.61□□□□□ -0.55
CXCL1P09341 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC11.61□□□□□ -0.55
CXCL1P09341 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CXCL1P09341 TBC1D22B-201ENST00000373491 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 AL031714.1-202ENST00000568106 3107 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CXCL1P09341 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC11.61□□□□□ -0.55
CXCL1P09341 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CXCL1P09341 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 HNRNPDP1-201ENST00000439535 754 ntBASIC11.61□□□□□ -0.55
CXCL1P09341 PHKG1P2-201ENST00000457537 863 ntBASIC11.61□□□□□ -0.55
CXCL1P09341 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC11.61□□□□□ -0.55
CXCL1P09341 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC11.61□□□□□ -0.55
CXCL1P09341 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC11.61□□□□□ -0.55
CXCL1P09341 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 IFNL4P1-201ENST00000607083 540 ntBASIC11.61□□□□□ -0.55
CXCL1P09341 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 MED16-214ENST00000617672 554 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 AL031008.1-201ENST00000619963 541 ntBASIC11.61□□□□□ -0.55
CXCL1P09341 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 MEX3B-202ENST00000558133 4333 ntBASIC11.61□□□□□ -0.55
CXCL1P09341 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC11.61□□□□□ -0.55
CXCL1P09341 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC11.61□□□□□ -0.55
CXCL1P09341 AC102953.2-201ENST00000609755 3026 ntBASIC11.61□□□□□ -0.55
CXCL1P09341 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC11.61□□□□□ -0.55
CXCL1P09341 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 KRT17P5-202ENST00000444070 2552 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CXCL1P09341 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC11.61□□□□□ -0.55
CXCL1P09341 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC11.6□□□□□ -0.55
CXCL1P09341 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms