Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 AL139385.1-201ENST00000611744 3272 ntBASIC13.63□□□□□ -0.23
HOXD4P09016 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.63□□□□□ -0.23
HOXD4P09016 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
HOXD4P09016 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.63□□□□□ -0.23
HOXD4P09016 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HOXD4P09016 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HOXD4P09016 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD4P09016 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 MIR326-201ENST00000362220 95 ntBASIC13.62□□□□□ -0.23
HOXD4P09016 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD4P09016 AC092506.1-202ENST00000401022 528 ntBASIC13.62□□□□□ -0.23
HOXD4P09016 AC104457.1-201ENST00000401024 814 ntBASIC13.62□□□□□ -0.23
HOXD4P09016 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD4P09016 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD4P09016 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.62□□□□□ -0.23
HOXD4P09016 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD4P09016 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 AC148477.4-201ENST00000613430 1793 ntBASIC13.62□□□□□ -0.23
HOXD4P09016 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 BEND3P1-201ENST00000421591 1944 ntBASIC13.62□□□□□ -0.23
HOXD4P09016 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.62□□□□□ -0.23
HOXD4P09016 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.62□□□□□ -0.23
HOXD4P09016 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.62□□□□□ -0.23
HOXD4P09016 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HOXD4P09016 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD4P09016 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXD4P09016 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.61□□□□□ -0.23
HOXD4P09016 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXD4P09016 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HOXD4P09016 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HOXD4P09016 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD4P09016 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
HOXD4P09016 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.61□□□□□ -0.23
HOXD4P09016 FAM8A4P-201ENST00000435433 1213 ntBASIC13.61□□□□□ -0.23
HOXD4P09016 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.61□□□□□ -0.23
HOXD4P09016 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.61□□□□□ -0.23
HOXD4P09016 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD4P09016 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD4P09016 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms