Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 AC078875.1-201ENST00000431907 724 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 AC006122.1-201ENST00000493323 440 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 RBM8B-201ENST00000555532 525 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 AC079328.1-201ENST00000560358 952 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 RN7SL574P-201ENST00000581512 297 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 KRT8P19-201ENST00000551916 1455 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 MIR600HG-201ENST00000449175 5984 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 AC007274.2-201ENST00000421675 662 ntBASIC17.46■□□□□ 0.39
HLA-DOAP06340 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 AL596276.2-201ENST00000447525 331 ntBASIC17.46■□□□□ 0.39
HLA-DOAP06340 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 CCNC-217ENST00000523985 958 ntTSL 2 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 LINC00554-201ENST00000564841 3011 ntBASIC17.46■□□□□ 0.39
HLA-DOAP06340 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
HLA-DOAP06340 AC073347.1-201ENST00000421633 2643 ntBASIC17.46■□□□□ 0.39
HLA-DOAP06340 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HLA-DOAP06340 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
HLA-DOAP06340 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 AC144522.1-201ENST00000625111 1658 ntBASIC17.45■□□□□ 0.38
HLA-DOAP06340 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HLA-DOAP06340 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.45■□□□□ 0.38
HLA-DOAP06340 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.45■□□□□ 0.38
HLA-DOAP06340 ISCA2P1-201ENST00000425548 448 ntBASIC17.45■□□□□ 0.38
HLA-DOAP06340 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms