Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
APOEP02649 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
APOEP02649 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
APOEP02649 CNN2P8-201ENST00000421872 913 ntBASIC15.69■□□□□ 0.1
APOEP02649 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.69■□□□□ 0.1
APOEP02649 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.69■□□□□ 0.1
APOEP02649 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.69■□□□□ 0.1
APOEP02649 AL590640.2-201ENST00000457038 527 ntBASIC15.69■□□□□ 0.1
APOEP02649 AC026434.2-201ENST00000506094 1078 ntBASIC15.69■□□□□ 0.1
APOEP02649 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.69■□□□□ 0.1
APOEP02649 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.69■□□□□ 0.1
APOEP02649 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.69■□□□□ 0.1
APOEP02649 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 ECM1P1-201ENST00000604092 1279 ntBASIC15.69■□□□□ 0.1
APOEP02649 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.69■□□□□ 0.1
APOEP02649 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.69■□□□□ 0.1
APOEP02649 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
APOEP02649 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
APOEP02649 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.69■□□□□ 0.1
APOEP02649 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
APOEP02649 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
APOEP02649 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOEP02649 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
APOEP02649 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 CICP14-201ENST00000629111 2732 ntBASIC15.68■□□□□ 0.1
APOEP02649 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.68■□□□□ 0.1
APOEP02649 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.68■□□□□ 0.1
APOEP02649 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.68■□□□□ 0.1
APOEP02649 ANKRD19P-201ENST00000338192 862 ntBASIC15.68■□□□□ 0.1
APOEP02649 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.68■□□□□ 0.1
APOEP02649 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.68■□□□□ 0.1
APOEP02649 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.68■□□□□ 0.1
APOEP02649 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.68■□□□□ 0.1
APOEP02649 AC078819.1-201ENST00000547454 765 ntBASIC15.68■□□□□ 0.1
APOEP02649 AC012085.1-201ENST00000548270 765 ntBASIC15.68■□□□□ 0.1
APOEP02649 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.68■□□□□ 0.1
APOEP02649 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.68■□□□□ 0.1
APOEP02649 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.68■□□□□ 0.1
APOEP02649 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 COX11-210ENST00000639671 696 ntBASIC15.68■□□□□ 0.1
APOEP02649 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.68■□□□□ 0.1
APOEP02649 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
APOEP02649 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.68■□□□□ 0.1
APOEP02649 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
APOEP02649 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.68■□□□□ 0.1
APOEP02649 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOEP02649 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.67■□□□□ 0.1
APOEP02649 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOEP02649 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms