Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 NFIC-211ENST00000641145 8399 ntBASIC16.65■□□□□ 0.26
MSH4O15457 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
MSH4O15457 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MSH4O15457 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
MSH4O15457 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.65■□□□□ 0.26
MSH4O15457 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH4O15457 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH4O15457 AC006033.1-201ENST00000440505 426 ntBASIC16.65■□□□□ 0.26
MSH4O15457 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH4O15457 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 RNMTL1P1-201ENST00000454103 560 ntBASIC16.65■□□□□ 0.26
MSH4O15457 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.65■□□□□ 0.26
MSH4O15457 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.65■□□□□ 0.26
MSH4O15457 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
MSH4O15457 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 AC015688.4-201ENST00000580780 1647 ntBASIC16.65■□□□□ 0.26
MSH4O15457 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH4O15457 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
MSH4O15457 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH4O15457 KRT8P28-201ENST00000433288 1390 ntBASIC16.64■□□□□ 0.26
MSH4O15457 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
MSH4O15457 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
MSH4O15457 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.64■□□□□ 0.25
MSH4O15457 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
MSH4O15457 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.64■□□□□ 0.25
MSH4O15457 AC103702.1-201ENST00000548801 2630 ntBASIC16.64■□□□□ 0.25
MSH4O15457 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
MSH4O15457 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.64■□□□□ 0.25
MSH4O15457 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
MSH4O15457 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.64■□□□□ 0.25
MSH4O15457 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.64■□□□□ 0.25
MSH4O15457 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.64■□□□□ 0.25
MSH4O15457 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.64■□□□□ 0.25
MSH4O15457 AC243960.2-201ENST00000600996 747 ntBASIC16.64■□□□□ 0.25
MSH4O15457 AL022328.3-201ENST00000607943 679 ntBASIC16.64■□□□□ 0.25
MSH4O15457 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
MSH4O15457 GPR182-203ENST00000622922 591 ntBASIC16.64■□□□□ 0.25
MSH4O15457 Z98259.2-201ENST00000641583 609 ntBASIC16.64■□□□□ 0.25
MSH4O15457 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
MSH4O15457 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.64■□□□□ 0.25
MSH4O15457 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.64■□□□□ 0.25
MSH4O15457 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
MSH4O15457 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.64■□□□□ 0.25
MSH4O15457 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH4O15457 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms