Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.81■□□□□ 0.6
NPHP1O15259 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.81■□□□□ 0.6
NPHP1O15259 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
NPHP1O15259 ISCA2P1-201ENST00000425548 448 ntBASIC18.81■□□□□ 0.6
NPHP1O15259 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.81■□□□□ 0.6
NPHP1O15259 IQSEC3P1-201ENST00000538799 536 ntBASIC18.81■□□□□ 0.6
NPHP1O15259 MIR3147-201ENST00000577811 66 ntBASIC18.81■□□□□ 0.6
NPHP1O15259 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
NPHP1O15259 AF254983.2-201ENST00000612331 135 ntBASIC18.81■□□□□ 0.6
NPHP1O15259 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
NPHP1O15259 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
NPHP1O15259 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NPHP1O15259 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
NPHP1O15259 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.81■□□□□ 0.6
NPHP1O15259 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 AC009090.5-201ENST00000624886 2285 ntBASIC18.8■□□□□ 0.6
NPHP1O15259 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 AC092978.1-202ENST00000637590 1327 ntBASIC18.8■□□□□ 0.6
NPHP1O15259 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.8■□□□□ 0.6
NPHP1O15259 FGFR3P1-201ENST00000449999 601 ntBASIC18.8■□□□□ 0.6
NPHP1O15259 AC116345.2-201ENST00000512837 523 ntBASIC18.8■□□□□ 0.6
NPHP1O15259 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.8■□□□□ 0.6
NPHP1O15259 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 MIR4750-201ENST00000584564 56 ntBASIC18.8■□□□□ 0.6
NPHP1O15259 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.8■□□□□ 0.6
NPHP1O15259 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.8■□□□□ 0.6
NPHP1O15259 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NPHP1O15259 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 AC011840.2-201ENST00000563063 1520 ntBASIC18.79■□□□□ 0.6
NPHP1O15259 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.79■□□□□ 0.6
NPHP1O15259 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 AL359258.3-201ENST00000622910 2331 ntBASIC18.79■□□□□ 0.6
NPHP1O15259 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NPHP1O15259 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC18.79■□□□□ 0.6
NPHP1O15259 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms