Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 REXO1L4P-201ENST00000605109 1937 ntBASIC14.33□□□□□ -0.12
PDLIM1O00151 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PDLIM1O00151 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM1O00151 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
PDLIM1O00151 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
PDLIM1O00151 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
PDLIM1O00151 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.32□□□□□ -0.12
PDLIM1O00151 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 AC067863.1-201ENST00000494933 530 ntBASIC14.32□□□□□ -0.12
PDLIM1O00151 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.32□□□□□ -0.12
PDLIM1O00151 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 AC007967.4-201ENST00000614700 386 ntBASIC14.32□□□□□ -0.12
PDLIM1O00151 MIR6080-201ENST00000617359 66 ntBASIC14.32□□□□□ -0.12
PDLIM1O00151 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.32□□□□□ -0.12
PDLIM1O00151 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM1O00151 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM1O00151 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM1O00151 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
PDLIM1O00151 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
PDLIM1O00151 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PDLIM1O00151 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.32□□□□□ -0.12
PDLIM1O00151 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
PDLIM1O00151 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
PDLIM1O00151 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.31□□□□□ -0.12
PDLIM1O00151 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 CYMP-203ENST00000474680 1263 ntBASIC14.31□□□□□ -0.12
PDLIM1O00151 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
PDLIM1O00151 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.31□□□□□ -0.12
PDLIM1O00151 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.31□□□□□ -0.12
PDLIM1O00151 AC027796.2-201ENST00000575326 344 ntBASIC14.31□□□□□ -0.12
PDLIM1O00151 MIR4453-201ENST00000584019 89 ntBASIC14.31□□□□□ -0.12
PDLIM1O00151 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.31□□□□□ -0.12
PDLIM1O00151 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 TUBB3P1-201ENST00000405796 1332 ntBASIC14.31□□□□□ -0.12
PDLIM1O00151 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.31□□□□□ -0.12
PDLIM1O00151 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
PDLIM1O00151 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms