Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AP3S2-216ENST00000617003 1561 ntBASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
SMKR1H3BMG3 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AC020658.7-201ENST00000624274 2442 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AC104457.1-201ENST00000401024 814 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AL355306.1-201ENST00000415580 579 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 FAM210CP-201ENST00000445714 574 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 TMEM198B-204ENST00000484016 896 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 PDPK2P-202ENST00000562415 1191 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AL773604.1-201ENST00000617417 272 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AL513190.1-201ENST00000621254 727 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 REXO1L1P-201ENST00000379010 6598 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AL157414.3-201ENST00000624276 1954 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 AL445209.1-201ENST00000607269 3491 ntBASIC10.97□□□□□ -0.65
SMKR1H3BMG3 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SMKR1H3BMG3 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 AC015909.5-201ENST00000624336 2266 ntBASIC10.96□□□□□ -0.65
SMKR1H3BMG3 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
SMKR1H3BMG3 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms