Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 MIR1202-201ENST00000408529 83 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC099336.1-201ENST00000417053 1171 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 ACE3P-201ENST00000423435 1973 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AL354989.2-201ENST00000435838 1540 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 BNIP3P42-201ENST00000454982 569 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 C8orf49-201ENST00000525043 1968 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 BNIP3P29-201ENST00000598302 571 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AC011447.5-201ENST00000616168 564 ntBASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
HCN3Q9P1Z3 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.27□□□□□ -0.12
HCN3Q9P1Z3 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 AL603764.1-201ENST00000636452 321 ntBASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HCN3Q9P1Z3 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms