Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 API5-203ENST00000455725 2257 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 SERPINA13P-202ENST00000478994 924 ntBASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 AC009093.10-201ENST00000641956 1442 ntBASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP4AQ9BY43 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 AC091951.1-201ENST00000512854 2465 ntBASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 GPAA1P2-201ENST00000417923 928 ntBASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 AC106794.1-201ENST00000506935 792 ntBASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 NKG7-204ENST00000595217 816 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 BNIP3P13-201ENST00000599968 566 ntBASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 AC243960.2-201ENST00000600996 747 ntBASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 AC023824.1-201ENST00000562945 2975 ntBASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP4AQ9BY43 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 MIR1247-201ENST00000408206 136 ntBASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 CICP12-201ENST00000455801 843 ntBASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms