Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 AC107373.2-201ENST00000607735 490 ntBASIC16.18■□□□□ 0.18
CCDC42Q96M95 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC42Q96M95 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC42Q96M95 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 MBLAC2-202ENST00000514906 1936 ntBASIC16.17■□□□□ 0.18
CCDC42Q96M95 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 NUS1P3-201ENST00000423502 862 ntBASIC16.17■□□□□ 0.18
CCDC42Q96M95 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 DNAJB3-202ENST00000449667 1266 ntBASIC16.17■□□□□ 0.18
CCDC42Q96M95 FAM86LP-201ENST00000478302 853 ntBASIC16.17■□□□□ 0.18
CCDC42Q96M95 AC067863.1-201ENST00000494933 530 ntBASIC16.17■□□□□ 0.18
CCDC42Q96M95 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC42Q96M95 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CCDC42Q96M95 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 ADAMTS7P1-201ENST00000613213 4793 ntBASIC16.16■□□□□ 0.18
CCDC42Q96M95 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC42Q96M95 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 TREML5P-201ENST00000421694 576 ntBASIC16.16■□□□□ 0.18
CCDC42Q96M95 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC42Q96M95 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms